Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 168 4e-37 seq9 131 1e-25 >seq1 Length=4437623 Score = 168 bits (186), Expect = 4e-37 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | ||| || || ||||| ||||||||||| |||||| |||| |||| |||||| Sbjct 1912049 AGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAAC 1911990 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 ||||| || ||||| ||||| ||||||||||| ||| | || ||||||||| |||| Sbjct 1911989 TGCTTCCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATC 1911930 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | || | | |||| ||||| || ||||| |||| ||||| ||||| ||| Sbjct 1911929 TTCGCCTTCACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCG 1911870 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||| Sbjct 1911869 GTGAGCGTCTTAACGAAGATCTGCAT 1911844 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||| || ||||| | |||| || ||||| |||||||| ||||| Sbjct 1911334 CCGCCGCGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 1911275 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || |||| | || || | ||||||||| ||||| ||||| || |||||||| | |||| Sbjct 1911274 AGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 1911215 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||| | | | || | || | || || || Sbjct 1911214 -ATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAAC 1911156 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || || |||||||||||||| Sbjct 1911155 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1911108 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || || ||||| ||||||||||||||| Sbjct 1911842 CCACCACGCAGACGGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1911783 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | ||| || || || || || | ||| ||||||||| || Sbjct 1911782 AGAGTGCGACCGTCCTCAAGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGG 1911723 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||| || ||||| ||| | | | | |||| || | || ||||| Sbjct 1911722 ATGCCTTCCTTATCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGAGGACTCGACT 1911663 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| || | ||| ||||| ||||||||||| Sbjct 1911662 TCCAGAGTGATAGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 1911616 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| |||| | || |||| || | ||||||||| || || Sbjct 1911527 TTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCAGCAAA 1911468 Query 34258 AATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 ||||| ||||| |||| || |||| | | ||||||||| ||||| ||| | || Sbjct 1911467 GATGAGACGCTGTTGGTCCGGCGGG-ATACCCTCCTTGTCTTGGATCTTCGCCTTGACAT 1911409 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | || | || || || || | |||||| || || ||||| | || || | Sbjct 1911408 TGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTCTTGA 1911349 Query 34377 CAAAGATCTGCAT 34389 | ||||| ||||| Sbjct 1911348 CGAAGATTTGCAT 1911336 >seq9 Length=3088601 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||| ||||| | || || || ||||| |||||||| || || Sbjct 2856023 CCGCCACGAAGACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAG 2856082 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | ||||||||| ||||||||||| |||||||||||| || Sbjct 2856083 AGCGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGA 2856142 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | |||| || | ||| || || Sbjct 2856143 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACC 2856202 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || ||||| || || || |||||||||||||| Sbjct 2856203 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCAT 2856249 Score = 129 bits (142), Expect = 4e-25 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34184 AGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAAC 34243 ||||| | || || || ||||| |||||||||||||| || || |||| |||||| Sbjct 2856553 AGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAAC 2856612 Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 |||||||| || || || || ||||| || || ||| | || ||||||||| ||| Sbjct 2856613 TGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATC 2856672 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | || | | || | |||| || ||||| || | ||||||||| |||||| Sbjct 2856673 TTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCG 2856732 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||||||||||||||| Sbjct 2856733 GTCAAGGTCTTCACAAAGATCTGCAT 2856758 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || || ||||| | ||| || ||||| ||||||||||| || Sbjct 2856250 TCCACCACGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 2856309 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| || | ||||||||| || || || || |||||||||||| || Sbjct 2856310 GAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 2856369 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | || | | |||| || | |||||||| Sbjct 2856370 AATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGATGATTCGAC 2856429 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || || ||||| || || || ||||||||||| Sbjct 2856430 CTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 2856477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071948813280