Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 1e-11 seq6 84.2 5e-11 >seq8 Length=3112363 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||| | ||||||||| ||||| ||| ||||||||||| || ||||| ||| || Sbjct 1723662 CTTCGGTTTCAAAACCTTGGAGCGATCATATCTCCTCAAGATCAATGGCCGAGTCGCCGA 1723721 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT--GACATAGAG 248943 || ||||| | | ||||| || |||||||| ||| || |||| || || || Sbjct 1723722 GCGGCCACAGCATCTACTCATGCGTGTAGCTGTCGGTATT--CATGGATCCGATATTGAC 1723779 Query 248944 AGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACG 249003 ||| | ||||| |||| | ||| || |||| | || || || | || || Sbjct 1723780 CGCGCCTTGGAGACATACAACCTCATGTCCGAGCGCTACTTCACCCACGCGTCGCCTACT 1723839 Query 249004 CTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAA 249063 |||||||||||||| || ||| || || ||||| ||||| || | ||||| || Sbjct 1723840 CTCTTCAACGCCGGGACTCCGAACCCGCAACTCAGCTCATGCTTCCTAGTGTCCATGAAA 1723899 Query 249064 GACGACTCTGTCGACGGCATTTA 249086 || || || |||| ||||| || Sbjct 1723900 GATGATTCCATCGAAGGCATCTA 1723922 >seq6 Length=3889359 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||| || | ||| | |||||||| ||||||||||| |||||||| Sbjct 951882 ACACCCGCCTTGGAGTAGTCAGACACACGCTTCTCAAAGAAGTTGGTCTTCCCCTGGAGC 951941 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||||||||| | ||||| ||||| | | |||||| ||| || | || || Sbjct 951942 GAGATCATGTCCATGAAGTCGAAGGGGTTCGTGACGTTGTAGTGCTTCTCATCGCCGAG- 952000 Query 157364 TGGTTCAGCCAGTA----GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 || | | || | ||| || || |||| |||||||| ||| ||| | | Sbjct 952001 -GG--CGACGAGAAGACGGTCAGCGACGAACTCGATGTACTGACGCATCAGGTTCGAGTT 952057 Query 157420 GATACCGATGAGCGCGACGGGAAGCGC 157446 || || ||||||||||| ||||| || Sbjct 952058 CATGCCAATGAGCGCGACCGGAAGTGC 952084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766221150784