Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 170 2e-37 seq8 143 2e-29 seq1 104 2e-17 seq9 100 3e-16 >seq6 Length=3889359 Score = 170 bits (188), Expect = 2e-37 Identities = 309/444 (70%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 57688 ACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGAT 57747 |||| | || || |||||||| || || || || || |||||||| | ||||| | | Sbjct 954379 ACGTCCTCGCCTTCTTCGCCGCCTCGGACGGGATCGTCAACGAGAACCTCGTCGAGCGGT 954438 Query 57748 TTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTG 57807 | || | |||||||| | | |||||| | ||||| ||||| || || | || | Sbjct 954439 TCTCCAACGAAGTGCAGGCCGCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATCG 954498 Query 57808 AAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACG 57867 | |||||||| || || | ||| ||||| |||||||| |||||||| ||| || Sbjct 954499 AGAACGTGCACTCGGAGACGTACTCGCTCCTCATCGACACGTACGTCCGCGACCCCGCGC 954558 Query 57868 AGAAA-CGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGCAGA 57925 || ||| |||||| |||||||| | || || ||| ||| |||| ||||| || Sbjct 954559 AGCGCGCGTTC-CTGTTCGACGCGATCAACACCATCCCCTGCG-TCGCGCGCAAGGCCGA 954616 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACG-GCCACGT--TCGCCGAGAGGCTAATCGC 57982 ||| | | ||||| || | || || ||| |||| ||| | || |||| Sbjct 954617 CTGGGCCCTGCGCTGGATCGC---CGACTCGCGCTCCGTCTTCGCAGAGCGCCTCGTCGC 954673 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 ||||||||||||||| || | ||||| || || ||| || || || || ||| | || Sbjct 954674 GTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGGTCCTTCGCCGCGATCTTCTGGCTCAA 954733 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| |||||| ||||||| || || ||||| ||||||| | || || ||||| ||||| Sbjct 954734 GAAGCGCGGCTTGATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCCCGCGATGAGGG 954793 Query 58103 TCTCCATACTGATTTTGCGTGCCT 58126 | || || || ||||||||||| Sbjct 954794 CATGCACACCGACTTTGCGTGCCT 954817 >seq8 Length=3112363 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || |||| ||| || || ||||||| ||||||||||| ||||| || || ||| Sbjct 1724289 AAGAGGTCGGGTACCCAAAGGGCATAGAACAAGTCGCGGGCGCGAACCTCTTCCTTCCCG 1724230 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||| | || | || || || || || || ||||| ||||| || || | Sbjct 1724229 TGGTTCTTGCGAAGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGATAGATA 1724170 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 |||||||||||||| | ||| |||||||||||||| ||||||||||| ||| || |||| Sbjct 1724169 GCAAACGCGCCCGGACGCTTGTTGCCGCCCTGATCAACGTAACGGGCAGTGGCGTCGTAC 1724110 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || | ||||| || |||| ||||| || Sbjct 1724109 ACACGGAGCATAGGAACGATTCCGTTCGA 1724081 Score = 98.7 bits (108), Expect = 9e-16 Identities = 244/369 (66%), Gaps = 11/369 (3%) Strand=Plus/Minus Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 |||||||| | || ||||| ||||| || ||| || || || |||||||| || || Sbjct 1725232 GGTTCGAAGCACTCGTTGTTACCCAGAATTTGACTAGTGGACGCAGTCGGCATGGGGGCA 1725173 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 | || || ||||| || | ||||| | | || || ||| || ||| ||| ||| Sbjct 1725172 AGAAGAAGGGAGTTCCTGAGACCGTGTTGAGCAACCTTCGCCTTCAGGCTCGCCCAATCC 1725113 Query 22631 CACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCG-- 22688 |||| |||| || ||||| | |||||| || | || | | ||| |||| Sbjct 1725112 CACAAGTCGGTGGGGGTCAC---GCCCCACAGGTCAAACTGAAGCTTGCC----CTCGGA 1725060 Query 22689 --CCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGC 22746 | || || || | ||| || ||||| || ||||| ||| || | || ||||| || Sbjct 1725059 AGCAGGACTCCCCTGGTATGTCTCGTAAGGCCCATAGATCTGTGCCATCTCACAGCTGGC 1725000 Query 22747 CTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC 22806 ||| | ||| | | || || ||||||||||| | | ||| | || | || | || Sbjct 1724999 CTCGACCGCTGCATGGTAGATCGTCTCGAAGATCTGCAAGTTGAGTTTGCGAGCCTCAAC 1724940 Query 22807 GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 ||| | ||||| || | | || |||||| || || | ||||||||| || | ||| Sbjct 1724939 CGAGTCGAAGGGCATGCGAAGCGCCATGAACGCATCGGCAAGACCCTGAACACCGACACC 1724880 Query 22867 GATCGGTCG 22875 ||| || || Sbjct 1724879 GATGGGACG 1724871 Score = 82.4 bits (90), Expect = 7e-11 Identities = 223/340 (66%), Gaps = 6/340 (2%) Strand=Plus/Minus Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 ||||||| | ||||| | | | ||| || || || ||| ||| |||||||||| Sbjct 1723999 TTGCTCGGATATTGTGGATATTAATACCAATCCCGCCAGCCGTTTTGCTGATCATCGCGC 1723940 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 | | ||||| || ||||||||| |||||| || ||||| | | || | ||| | Sbjct 1723939 AGTCCTTCAGCGTCGAGTAGATGCCTTCGATGGAATCATCTTTCATGGACACTAGGAAGC 1723880 Query 23718 ACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAA 23777 | || | ||||| || || || |||| ||| || || || ||||| || | Sbjct 1723879 ATGAGCTGAGTTGCGGGTTCGGAGTCCCGGCGTTGAAGAGAGTAGGCGACGCGTGGGTGA 1723820 Query 23778 AGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTA 23837 |||| | | ||||| || ||||| || || | |||| ||||| || ||| || | Sbjct 1723819 AGTAGCGCTCGGACATGAGGTTGTATGTCTCCAAGGCGCGGTCAATATCGGATCCATGAA 1723760 Query 23838 TACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC---GCCGTTAA 23894 |||||| || || ||||| | | | || || | |||| | ||| ||| || | Sbjct 1723759 TACCGACAGCTACACGCATGAGTAGATGCTGTGGCCGCTCG---GCGACTCGGCCATTGA 1723703 Query 23895 TTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 | |||| |||||||| || | || ||||| || || || Sbjct 1723702 TCTTGAGGAGATATGATCGCTCCAAGGTTTTGAAACCGAA 1723663 >seq1 Length=4437623 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| |||||| |||| ||||| || ||||| | || || || | || Sbjct 1911615 CATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACTATCACTCTGGAAGTCGAGTCCTC 1911674 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || ||| ||||||||| | ||||||||||| Sbjct 1911675 AGACACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCGCCCGACCA 1911734 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || || || || |||||| | || ||| | ||| || ||| || || Sbjct 1911735 GCAACGGTTGATCTTTGCGGGAAAACAGCTTGAGGACGGTCGCACTCTGTCCGACTACAA 1911794 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || ||||| |||| || | ||| | || |||| Sbjct 1911795 CATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCCGTCTGCGTGGTGGTA 1911844 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| ||||| | || || || | ||| Sbjct 1911844 ATGCAGATCTTCGTTAAGACGCTCACCGGGAAAACAATCACATTGGAGGTCGAGTCTTCC 1911903 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || ||| ||||||||| ||| | || || |||||| Sbjct 1911904 GATACGATCGACAATGTGAAGGCGAAGATACAGGACAAGGAGGGCATTCCCCCGGACCAG 1911963 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||| || || |||||||| || |||||||| ||| Sbjct 1911964 CAGCGCCTCATCTTCGCTGGGAAGCAGTTGGAGGAC 1911999 >seq9 Length=3088601 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || ||||| || | || || ||| | || Sbjct 2856478 CATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTGGAGGTCGAATCATC 2856419 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || || |||||||||||| | || |||||||| Sbjct 2856418 GGACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCA 2856359 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| | |||||| | ||| | || || || Sbjct 2856358 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTCTCGGACTACAA 2856299 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || |||||||| || || || || Sbjct 2856298 CATCCAGAAGGAGTCGACTCTGCACCTTGTCCT 2856266 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| || || || |||||| | || ||||| |||| Sbjct 2856249 ATGCAGATCTTTGTCAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTTGAGTCGTCG 2856190 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| || | |||||||||||| Sbjct 2856189 GACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCGCCCGACCAG 2856130 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || ||||| ||||| ||| | || || Sbjct 2856129 CAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGA 2856095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766327562960