Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 208 1e-48 seq8 84.2 3e-11 >seq6 Length=3889359 Score = 208 bits (230), Expect = 1e-48 Identities = 384/560 (69%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | || || | || ||| Sbjct 952792 ATCTGGCAAATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCTGAGGAAATGGACCTG 952733 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| ||| | || ||| | | || | | | ||| || | || || ||| Sbjct 952732 TCCAAGGATCTGCATGACTGGAACAACCGCCTCAACAACGATGAACGCCACTTCATCTCG 952673 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || |||| ||||| |||| |||||| || ||||||||||| || ||| | || Sbjct 952672 CACGTTCTGGCGTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTGGTAGAGCGT 952613 Query 125199 TTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGA 125256 ||||| | ||| | ||| | | |||| | ||||| ||||| ||||| ||||||| Sbjct 952612 TTCTCCAACGAGGT--CCAGGCGGCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGA 952555 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG- 125315 | |||||| | ||||| || | |||||| || || |||| ||| || || || Sbjct 952554 TGGAGAACATTCACTCTGAGACGTACTCGCTCCTCATCGACACGTATATCAAGGACCCCG 952495 Query 125316 --CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || || | ||| ||||| | || ||||| || | || | || || |||| Sbjct 952494 CACAGCGCGAGCAC---CTCTTCGATGCCATCGAGACTATCCCCTGCATTAAGAAGAAGG 952438 Query 125374 CTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGG 125433 || | |||| |||| |||||| ||| | |||| | | ||| || | || || | Sbjct 952437 CTGATTGGGCTCTTCGCTGGATCTCGGACAAGGAGTCAGCCTTCGCTGAACGCCTTGTAG 952378 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 | ||||| ||||| ||||| ||||| || || || ||| || ||||||| ||||||| Sbjct 952377 CCTTCGCTGCCGTCGAGGGTATCTTTTTCTCTGGCTCTTTCGCCTCCATCTTCTGGCTCA 952318 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| | ||||| || || || | ||||||| | || || || || |||| Sbjct 952317 AGAAGCGCGGCTTGATGCCTGGCCTCACCTTCTCTAACGAGCTCATCTCCCGCGATGAGG 952258 Query 125554 GCCTACACTGTGACTTTGCC 125573 || | ||| ||||| ||| Sbjct 952257 GCATGCACACCGACTTCGCC 952238 Score = 161 bits (178), Expect = 1e-34 Identities = 380/563 (67%), Gaps = 18/563 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| | || || || ||||| ||||| ||||||||| |||| || Sbjct 954258 ATATGGCAGATGTACAAGGACGCCCAAGCATCCTTCTGGACCGTCGAAGAGATCGACCTC 954317 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||| | ||||| || ||| ||| | || | |||| | || | || Sbjct 954318 TCCTACGACCTCATGGACTGGACGACCAAGCTCACCCCCAACGAGCAGCACTTCGTCTCC 954377 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | | |||||||| |||| ||| || || ||||||||||| || || || || || Sbjct 954378 TACGTCCTCGCCTTCTTCGCCGCCTCGGACGGGATCGTCAACGAGAACCTCGTCGAG-CG 954436 Query 125198 ATTCTCTCAAGAGTTGACCATTCCA--GAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||||| | || || || || |||| | ||||| ||||| ||||| |||||| Sbjct 954437 GTTCTCCAACGAAGTG--CAGGCCGCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATG 954494 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC-- 125313 || ||||||||||||||||| | |||||| || || |||| |||| | ||||| | Sbjct 954495 ATCGAGAACGTGCACTCGGAGACGTACTCGCTCCTCATCGACACGTACGTCCGCGACCCC 954554 Query 125314 -CGCAACGTAAACAC-ATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 |||| || | | | || || |||| ||| |||| | || | | || Sbjct 954555 GCGCAGCG----CGCGTTCCTGTTCGACGCGATCAACACCATCCCCTGCGTCGCGCGCAA 954610 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCG--TACGCCGACAGACTG 125429 ||| | |||| | || ||||||| ||| | | || || | ||| || | || Sbjct 954611 GGCCGACTGGGCCCTGCGCTGGATCGCCGAC-TCGCG-CTCCGTCTTCGCAGAGCGCCTC 954668 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||||||||| |||||| ||||||| || || || || || ||||| ||| Sbjct 954669 GTCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGGTCCTTCGCCGCGATCTTCTGG 954728 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||||||||| | ||||| || || ||| | |||||| | || || || || Sbjct 954729 CTCAAGAAGCGCGGCTTGATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCCCGCGAT 954788 Query 125550 GAGGGCCTACACTGTGACTTTGC 125572 |||||| | ||| |||||||| Sbjct 954789 GAGGGCATGCACACCGACTTTGC 954811 >seq8 Length=3112363 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 96831 GTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAA 96890 || || |||||| | ||||| | || | | || |||||| ||||||||||| || Sbjct 1724093 GTTCCTATGCTCCGTGTGTACGACGCCACTGCCCGTTACGTTGATCAGGGCGGCAACAAG 1724152 Query 96891 CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATC 96950 || || ||||| | || |||| | || ||||||||||| || || || || || | Sbjct 1724153 CGTCCGGGCGCGTTTGCTATCTATCTTGAGCCTTGGCACGCCGATGTCTTCGAGTTCCTT 1724212 Query 96951 GAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTC 97010 || | ||||| ||| || ||||||| || ||| | |||||||| ||||| || Sbjct 1724213 GACCTTCGCAAGAACCACGGGAAGGAAGAGGTTCGCGCCCGCGACTTGTTCTATGCCCTT 1724272 Query 97011 TGGGTGCCAGA 97021 ||||| || || Sbjct 1724273 TGGGTACCCGA 1724283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059079577880