Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9 131 4e-25 >seq9 Length=3088601 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || || || | || || || ||||| || || ||||| Sbjct 2856248 ATTCCACCACGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCC 2856307 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||||||| || || || || ||||| || || | ||| || || ||| Sbjct 2856308 GAGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGA 2856367 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||| || || ||||| || | || || | ||| Sbjct 2856368 GGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGATGATTCG 2856427 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| |||||||| || || || || || || |||||||| Sbjct 2856428 ACCTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 2856477 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || || | |||||| || | || || |||||||| Sbjct 2856568 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAG 2856627 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||||||||| || || || || || || ||||||||||| || || ||||| Sbjct 2856628 ATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 2856687 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| || || ||||| || || || ||||| || || | || || ||| Sbjct 2856688 TCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACA 2856747 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 2856748 AAGATCTGCAT 2856758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398208220204