Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 3e-13 seq6 89.7 3e-13 seq9 82.4 4e-11 >seq12 Length=2614590 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||| | | |||||||||| ||||||| ||||||||||||| ||| Sbjct 2350318 AAAAAACAA--TGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACG 2350375 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| ||||||||||||| | |||||| Sbjct 2350376 CTCTAACCAACTGAGCTAGTCGGCCGT 2350402 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 2415523 TTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 2415464 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| | |||| Sbjct 2415463 CTGAGCTAGTCGGCC 2415449 >seq6 Length=3889359 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||| | | |||||||||| ||||||| ||||||||||||| ||| Sbjct 2675098 AAAAA--AAGTTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACG 2675155 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| ||||||||||||| | |||||| Sbjct 2675156 CTCTAACCAACTGAGCTAGTCGGCCGT 2675182 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 2661100 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 2661041 Query 11528 CCGT 11531 |||| Sbjct 2661040 CCGT 2661037 >seq9 Length=3088601 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 254188 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 254129 Query 11528 CC 11529 || Sbjct 254128 CC 254127 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491158569988