Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq9 91.5 1e-13 >seq1 Length=4437623 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || ||| || |||| ||||| Sbjct 1911824 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCA 1911765 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||||||||| ||||||| || | |||||| || || || || ||||| || || | Sbjct 1911764 AGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGG 1911705 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | ||| ||||| | | ||||| || | ||||| || || Sbjct 1911704 ATCTTCGCCTTGACGTTGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTTG 1911645 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || | ||| ||||| ||||||||||||| Sbjct 1911644 CCCGTCAAAGTCTTCACGAAGATCTGCATGC 1911614 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | |||||| ||||| || | ||| |||||| | ||| | | Sbjct 1911322 CGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGGCCA 1911263 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | |||||| || || || ||||| || ||| Sbjct 1911262 TCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTG 1911203 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||||||||||| ||| ||||| | || || || | ||||| Sbjct 1911202 TCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATC 1911143 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || |||||||||||||||| Sbjct 1911142 GTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGC 1911106 >seq9 Length=3088601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGC 94861 ||||| ||| || ||||| || | ||| || || | || || || || || ||| Sbjct 2856274 GTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCG--AGAGAGTACGACCGTCTTCGAGC 2856331 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || ||| ||||||| | | ||||| || |||||||||||||| ||||| | ||| Sbjct 2856332 TGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATC 2856391 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || |||||||| | ||| ||||| | ||||| || | || || || || || Sbjct 2856392 TTCGCCTTGACATTGTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTACCC 2856451 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || ||||||||||||| Sbjct 2856452 GTGAGGGTCTTGACGAAGATCTGCATGC 2856479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || || ||||||| | | || ||||| || ||||| || || ||| Sbjct 2856604 TCCTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTG 2856663 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || |||||||| | ||| ||||| | ||||| || | ||||||| Sbjct 2856664 TCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATG 2856723 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || ||||||||||||||||| Sbjct 2856724 GTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2856758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291127152680