Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-20 seq1 98.7 2e-16 seq10 84.2 3e-12 >seq12 Length=2614590 Score = 111 bits (122), Expect = 2e-20 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| |||||||||||||| || ||||||||||| ||||||||| |||| Sbjct 1680011 AGGTATCACGAAGCCTGCTATCCGTCGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTC 1679952 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | ||||||| |||| |||| ||| | |||||||||||| ||| ||| Sbjct 1679951 CGGCCTCATCTATGAGGAGACCCGTGGTGTCCTCAAGATCTTCCTCGAGAACGT 1679898 Score = 89.7 bits (98), Expect = 8e-14 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| ||||| |||||||||||||| || |||||||| ||||| |||||| |||| Sbjct 2123428 AGGTATCACTAAGCCCGCTATCCGTCGTCTTGCACGTCGTGGCGGAGTGAAGCGTATCTC 2123369 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | | || || || | || | ||| |||||||||||||| | | ||| Sbjct 2123368 GGGCCTCATTTACGAGGAAACCCGGGGTGTCCTGAAGATCTTCCTCGAAAACGT 2123315 >seq1 Length=4437623 Score = 98.7 bits (108), Expect = 2e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16487 GCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 ||||| || ||||| || || |||||||| ||||||||| | ||||| | |||| || Sbjct 3317679 GCTATTCGCCGTCTTGCCCGCCGTGGTGGTGTCAAGCGTATTTCTGGTCTCATCTACGAG 3317738 Query 16547 GAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTAT 16606 |||| ||||| ||| ||||||||||||| ||| ||| || | || || || ||| Sbjct 3317739 GAGACTCGTGGTGTGCTGAAGATCTTCCTGGAGAACGTCATTCGCGACTCTGTCACCTAC 3317798 Query 16607 ACCGAGCACGCTAA 16620 || ||||||||||| Sbjct 3317799 ACGGAGCACGCTAA 3317812 >seq10 Length=3045029 Score = 84.2 bits (92), Expect = 3e-12 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||||||||| ||||| || ||||| || ||||| || || ||||||||| | || Sbjct 2224851 AGGTATCACCAAGCCCGCTATTCGCCGTCTTGCCCGTCGAGGGGGTGTCAAGCGTATATC 2224910 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGT 16584 || | | || || |||| |||| |||| ||||||||||| | ||| ||| Sbjct 2224911 CGGCCTCATTTACGAGGAGACGCGTGGTGTTCTGAAGATCTTCTTGGAGAACGT 2224964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075188114009