Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq9 105 6e-18 seq1 105 6e-18 seq6 84.2 2e-11 >seq9 Length=3088601 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | || | ||||||||||| || |||||||| || Sbjct 2856251 CCACCACGCAGACGGAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 2856310 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || ||||||||||| || |||| | ||||||||||| ||||| Sbjct 2856311 AGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGA 2856370 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| ||||| | || | || || | || |||| Sbjct 2856371 ATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGATGATTCGACC 2856430 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| || ||||| || || || || ||||| ||||||||| Sbjct 2856431 TCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 2856478 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | ||| |||||| || ||||||||||| Sbjct 2856023 CCGCCACGAAGACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAG 2856082 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| | || | ||||||||||| || || Sbjct 2856083 AGCGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGA 2856142 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || || | ||||| | Sbjct 2856143 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACC 2856202 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || || || |||||||| Sbjct 2856203 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCAT 2856249 >seq1 Length=4437623 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||||| || | || | || |||||||| || |||||||||||| Sbjct 1911334 CCGCCGCGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 1911275 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| | || ||||||||||| ||| Sbjct 1911274 AGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 1911215 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 1911214 ATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAACC 1911155 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | || || || || || || || || || ||||||||| Sbjct 1911154 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 1911107 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 131031 ATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTG 131090 ||| | ||| || ||||| ||||||||||| || || || || ||| || ||||| Sbjct 1911539 ATGCAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTG 1911480 Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 |||||| || |||| | |||||| |||||||| ||||| || || ||||| ||| || Sbjct 1911479 CTTGCCAGCAAAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTT 1911420 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | ||||| | || | ||| || | |||||| | |||| || | || || ||||| Sbjct 1911419 CGCCTTGACATTGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGT 1911360 Query 131211 TAGAGTTTTTACGAAAATCTGCAT 131234 | || || ||||| || ||||| Sbjct 1911359 CAATGTCTTGACGAAGATTTGCAT 1911336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131043 CTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTA 131102 |||||| || |||||||| || || || || |||||| | |||||| || ||| | Sbjct 1912035 CTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAACTGCTTCCCAGCGAA 1911976 Query 131103 GATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 ||| | |||||||||||||| || || || || ||||| || ||| ||| | | Sbjct 1911975 GATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATCTTCGCCTTCACATT 1911916 Query 131163 CTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 || | ||||||| ||||||| || | || | ||||| ||||| || || || || Sbjct 1911915 GTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCGGTGAGCGTCTTAAC 1911856 Query 131223 GAAAATCTGCAT 131234 ||| |||||||| Sbjct 1911855 GAAGATCTGCAT 1911844 Score = 86.0 bits (94), Expect = 6e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||||| | ||||| |||||| ||||||||||| Sbjct 3824911 GTAGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 3824970 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGAT 131129 ||| |||| | ||||||||||| || ||||| Sbjct 3824971 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGAT 3825002 >seq6 Length=3889359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 ||||| ||||| | || || || || || ||||||||||| || || || || Sbjct 954654 TTCGCAGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGGTCCTTC 954713 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 ||||| ||||| | |||| | ||| | ||||| || || ||||| ||||||| Sbjct 954714 GCCGCGATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGTCTCACGTTCTCCAACGAG 954773 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 || || || ||||| |||||| |||| || ||||||||||| || Sbjct 954774 CTCATCTCCCGCGATGAGGGCATGCACACCGACTTTGCGTGCCT 954817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012723297920