Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-32 >seq6 Length=3889359 Score = 154 bits (170), Expect = 2e-32 Identities = 373/563 (66%), Gaps = 9/563 (2%) Strand=Plus/Plus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 ||||| || |||||||| || | || || || || || || | ||| || ||| || Sbjct 952233 AAGCAGGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTAGAGAAGGTG 952292 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | || || | || || || ||||||||||| || || || || ||| ||||| ||| Sbjct 952293 AGGCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAA 952352 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || ||||| || ||||| || || || |||| ||||| || || || || | || Sbjct 952353 AAGATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAA---GGCTGACTCCTTG 952409 Query 93269 ---CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 |||||| | ||||||||| || || |||||||| || || | || ||||| Sbjct 952410 TCCGAGATCCAGCGAAGAGCCCAATCAGCCTTCTTCTTAATGCAGGGGATAGTCTCGATG 952469 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || | || |||| || |||| | | || || || || ||||| | || || Sbjct 952470 GCATCGAAGAGGTGCTCGCGCTGTGCGGGGTCCTTGATATACGTGTCGATGAGGAGCGAG 952529 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||| | ||||| || | |||||||| || ||||| |||||||| || | || || Sbjct 952530 TACGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCG 952589 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | ||| || || | || || | |||||| || || || ||||| ||||| ||||| Sbjct 952590 GCCGCCTGGACCTCGTTGGAGAAACGCTCTACCAGGTTCTCGTTGACGATACCGTCGGAG 952649 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTA 93562 || || || || |||| | ||| || || || ||||| | || | | || Sbjct 952650 GCGGCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCATCGTTGTTGAGGCGGTTG 952709 Query 93563 TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 | ||| || ||||| || || || || | ||| || | ||||| || ||||| || Sbjct 952710 TTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGGTCCAGAAGGATGCCTCG 952769 Query 93623 GCTTTTTTGTACATATCCCATAT 93645 || || |||||||| | ||| || Sbjct 952770 GCCTTCTTGTACATTTGCCAGAT 952792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860709510120