Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq6 113 9e-20 seq8 93.3 9e-14 >seq7 Length=3674663 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || || || ||||||||||||||||| || ||| | |||||||| || | || Sbjct 571123 GGTTCGCTCTCTGGCGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATGCTCTTCCGC 571182 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 || || |||| |||| || ||||| |||||||| ||||| | ||| || || ||| Sbjct 571183 GCTGACATCCTCTTGCTCGACGAGCCCACCAACCATTTGGACGTCGTCAATGTCGCTTGG 571242 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| ||||| ||||||| | || |||| ||||| ||||| || Sbjct 571243 CTCGAGAACTACCTCACCAGCCTGAAGACCTGCACGTCGATCATCGTCTCGCACGATTCG 571302 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 571303 GGCTTCCT 571310 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| | ||||||||||| || |||| ||||||||||| ||| Sbjct 570722 GGTGAGGACCTGTGCAACTGCCAGTTCTCGCTCGCGTACGGTGCCAAGATTCTGCTCAAC 570781 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | | ||| | |||||||||| |||| || |||||| ||||| || || | Sbjct 570782 ACCGCGACCCTGCGCCTCAAGCGTGGTCACCGCTACGGTCTCTGCGGTCGTAACGGTACC 570841 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| |||||| ||||| ||||| | ||||| Sbjct 570842 GGCAAGTCCACTCTCATGCGTGCCATCACGAACGG 570876 Score = 91.5 bits (100), Expect = 3e-13 Identities = 121/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || ||||| ||| | || ||||||||||| |||| | || | || || | Sbjct 571600 GTCCTCGGTCCCAACGGTTCCGGCAAGTCTACCCTCGTCAAGCTTCTCATCGGTGATCTC 571659 Query 280233 CAGGCCA-CTGAGG-GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| | | || ||| | | |||||||| |||||| || || | ||||||||| Sbjct 571660 GAGCCCAACCGTGGCGGTGAGATCTGGAAGCACCCCAACTTGGTCATTGGTTACGTCGCG 571719 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333 ||||| || |||||||||||||| |||||||| || | |||||| Sbjct 571720 CAGCATGCGTTCCACCACATCGATAACCACCTCGATAAGACTCC 571763 >seq6 Length=3889359 Score = 113 bits (124), Expect = 9e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || ||||| ||||| || ||||| || | ||| |||| || ||||| | |||||| Sbjct 951897 TAGTCAGACACACGCTTCTCAAAGAAGTTGGTCTTCCCCTGGAGCGAGATCATGTCCATG 951956 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 |||||||||||||| ||| | ||||| ||||| || ||| || || |||| | ||| Sbjct 951957 AAGTCGAAGGGGTTCGTGACGTTGTAGTGCTTCTCATCGCCGAGGGCGACGAGAAGACGG 952016 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || || ||||| | ||||| | |||||| | |||||||||||||| Sbjct 952017 TCAGCGACGAACTCGATGTACTGACGCATCAGGTTCGAGTTCATGCCAAT 952066 >seq8 Length=3112363 Score = 93.3 bits (102), Expect = 9e-14 Identities = 232/343 (68%), Gaps = 16/343 (5%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCA--TAGACTTCAGTGTGG 293089 || || || ||||||||||| | ||||| |||| |||| | | | | ||| || Sbjct 1725626 GTCTTGAGGCCCTTCTTCCACCCATAGAAGTGCATGCTCGTCAACTGGCCGTTCGTGGGG 1725567 Query 293090 GAGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAG 293149 || ||| ||| | ||| | ||||| ||| || || || || ||||| || | Sbjct 1725566 GATTGG--AGGTGGACGTTAAGTGACTGCGACTGGCAGATGAAAGCGCCTCGATCCGCGG 1725509 Query 293150 CGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACAT 293209 | ||||||| || ||||| ||||||||||| |||||||| | |||||||| | Sbjct 1725508 CAAGGTCAAGGACCTTCTTCTGCGAGATCTCCCAGACGGTCTTGTAGATCGCCTTGACGT 1725449 Query 293210 C----AGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTC 293265 | ||||| ||| | || ||||||| ||| || ||| || || ||| |||| Sbjct 1725448 CGTCGGGGATG-ATGTCGAT---GTTCTGGACAGAACCGTTGTTCGCGATGATCATGTTC 1725393 Query 293266 TTCATTGTC-TCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGA 293323 |||| |||| ||| ||| || || | | | | |||||||||| || | | | || Sbjct 1725392 TTCA-TGTCGTCGTTCCAGAGACCGA-GCTCGACCAGCTCGCGGAGGAGCCACGGGCAGA 1725335 Query 293324 CAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTT 293366 | || |||||||||| |||||| ||| || |||||||||| Sbjct 1725334 CGACTTGGAACTCACCCGCGAGAACGCGGCGAGTGTAAATGTT 1725292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836628800933