Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq9 93.3 4e-14 >seq1 Length=4437623 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | || ||| | || | ||||| || || || |||||||||||| Sbjct 1911337 ATACCGCCGCGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCG 1911278 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || || || ||| ||||||| || || |||||||| Sbjct 1911277 GAAAGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGC 1911218 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | || | |||||| | || || Sbjct 1911217 GGGATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCA 1911158 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | ||| ||||| || || || || ||||| ||||||||| Sbjct 1911157 ACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATG 1911107 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||||||||| || || || ||| |||||||| || || ||| Sbjct 1911532 GTAGATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCA 1911473 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||||||||||||||| || || || || ||||| ||||| || Sbjct 1911472 GCAAAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTCGCCTTG 1911413 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | ||| || || || | || | ||| || ||||||| || Sbjct 1911412 ACATTGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTC 1911353 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 1911352 TTGACGAAGATTTGCAT 1911336 >seq9 Length=3088601 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 || || || |||||||| ||| | || ||| || || | || || ||||| || Sbjct 2856568 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAG 2856627 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || ||||||||||| ||||| |||||||| || ||||| |||||| || | | Sbjct 2856628 ATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 2856687 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 || | |||||||| || ||||| || | || | || |||||||||| || || ||| Sbjct 2856688 TCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACA 2856747 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 2856748 AAGATCTGCAT 2856758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134333434956