Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 127 5e-24 seq1 123 6e-23 seq6 95.1 3e-14 >seq9 Length=3088601 Score = 127 bits (140), Expect = 5e-24 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 288277 GTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCT 288336 ||||| || || ||||| || ||||||| ||| ||||| ||||| || || || || || Sbjct 2856562 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCA 2856621 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| ||||||||||| ||| ||| || || || || ||||| || || || Sbjct 2856622 GCAAAGATAAGACGCTGTTG---ATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCC 2856678 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | ||| || || || ||||||||||| ||||| ||||||| Sbjct 2856679 TTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAG 2856738 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| || || |||||||| Sbjct 2856739 GTCTTCACAAAGATCTGCAT 2856758 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || || | ||| || || || | ||||| || || ||||| || || || | | Sbjct 2856023 CCGCCACGAAGACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAG 2856082 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || ||||| || || ||||| || || Sbjct 2856083 AGCGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGA 2856142 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || ||| || || Sbjct 2856143 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACC 2856202 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| |||||||||||||| |||||||| || ||||||||| Sbjct 2856203 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCATT 2856250 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| || || |||||||| | || || || || ||| Sbjct 2856287 TCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAAG 2856346 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || || || ||||| || ||||| || ||||| || || || Sbjct 2856347 ATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATTG 2856406 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||||| || || || || |||||||| || || || ||||||||| Sbjct 2856407 TCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGACG 2856466 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2856467 AAGATCTGCAT 2856477 >seq1 Length=4437623 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| ||||| || | |||||||| || ||| Sbjct 1911806 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCAAGCTGTTTTCCCGCAAAG 1911747 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || || ||||| ||||| ||||||||||| ||||| || ||||| Sbjct 1911746 ATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGGATCTTCGCCTTGACGTTG 1911687 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || ||||| || ||||| ||||| || |||| |||||| ||| Sbjct 1911686 TCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTTGCCCGTCAAAGTCTTCACG 1911627 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 1911626 AAGATCTGCAT 1911616 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| | | ||| || |||||||| | || || || || || Sbjct 1911527 TTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCAGCAAA 1911468 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||||||||| ||||| || || || || ||||| ||||| || || || Sbjct 1911467 GATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTCGCCTTGACATT 1911408 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || || || ||||||||||||||||| ||||||| |||||||| Sbjct 1911407 GTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTCTTGAC 1911348 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 1911347 GAAGATTTGCAT 1911336 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || |||| || || || ||||| || || |||| Sbjct 1911334 CCGCCGCGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAA 1911275 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || |||||||| || || || || ||| Sbjct 1911274 AGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 1911215 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || || || ||||| || || | || || || || Sbjct 1911214 ATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAACC 1911155 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || || || |||||||| || |||||||| Sbjct 1911154 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1911108 >seq6 Length=3889359 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 269146 TCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGT 269205 ||| | || || ||||| || || |||||| ||| || || |||||||| || || || Sbjct 954985 TCTCTCATTGGCATGAACGCAGACCTCATGTGTCAGTACATAGAATTCGTCGCCGACCGG 955044 Query 269206 ATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATG 269265 | || || ||||| | |||||| ||| ||| |||||| |||| ||||||| Sbjct 955045 CTGCTCGTCGCCCTCGGGAACGAGAAACACTACGGCGCGACGAATCCATTCGACTTTATG 955104 Query 269266 GAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGT 269312 || | || |||||| | || ||||| ||||||||||| ||||| || Sbjct 955105 GACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 955151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654203513814