Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 127 5e-24 >seq6 Length=3889359 Score = 127 bits (140), Expect = 5e-24 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| |||||||||||||| | || ||| | ||||||||||| ||||| || ||||| | Sbjct 952070 GCTCATTGGCATGAACTCGAACCTGATGCGTCAGTACATCGAGTTCGTCGCTGACCGTCT 952011 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | || |||| || || ||||||| |||||| || ||||||||| | ||| ||||| Sbjct 952010 TCTCGTCGCCCTCGGCGATGAGAAGCACTACAACGTCACGAACCCCTTCGACTTCATGGA 951951 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || ||||| || |||||||| || |||||||| Sbjct 951950 CATGATCTCGCTCCAGGGGAAGACCAACTTCTTTGAGAAGCGTGT 951906 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || |||||||||||| | || |||||| | |||||||| |||||||| |||||||| | Sbjct 954988 CTCATTGGCATGAACGCAGACCTCATGTGTCAGTACATAGAATTCGTCGCCGACCGGCTG 955047 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| || || | |||||| ||| | | | ||| || || | ||||||||| Sbjct 955048 CTCGTCGCCCTCGGGAACGAGAAACACTACGGCGCGACGAATCCATTCGACTTTATGGAC 955107 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || || ||||||||||| ||||| || Sbjct 955108 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGT 955151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879816301550