Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 122 9e-23 seq1 114 1e-20 >seq9 Length=3088601 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | ||| | ||| | |||| ||||||||||| || || |||||||| | Sbjct 2856021 GACCGCCACGAAGACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCG 2856080 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 || || || | || || |||||||| || ||||| ||||| ||||||||||||| | Sbjct 2856081 AGAGCGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCG 2856140 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | | |||||||||| ||| || || | ||| | | | |||||| ||| || Sbjct 2856141 GAATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCA 2856199 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | |||||||| || || || || ||||| |||||||| |||||| Sbjct 2856200 ACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCATT 2856250 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || | || || || |||| || | |||||| ||| Sbjct 2856562 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCA 2856621 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 42130 || || || || ||||| || || | || | || |||||||||| ||| | || | || Sbjct 2856622 GCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTT 2856680 Query 42131 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 || | | | |||||| || || || |||| ||||||||| ||||| || | || Sbjct 2856681 GACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGT 2856740 Query 42191 CTTTACAAAGATTTGCAT 42208 ||| |||||||| ||||| Sbjct 2856741 CTTCACAAAGATCTGCAT 2856758 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||||| || |||| || |||||||| || || || Sbjct 2856286 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAA 2856345 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||||| || | | ||||||||| ||| | || | |||| Sbjct 2856346 GATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCC-TGAATCTTCGCCTTGACAT 2856404 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||||| || || | || || || || ||||| || ||||| | Sbjct 2856405 TGTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGA 2856464 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 2856465 CGAAGATCTGCAT 2856477 >seq1 Length=4437623 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||||||||||| || || ||||| |||| ||| || || |||| || | |||| Sbjct 1912046 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAACTGC 1911987 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || |||||||| ||||| ||||||||||| | || | || |||||||||| || || Sbjct 1911986 TTCCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATCTTC 1911927 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 || | | | | ||| ||| || || || || | ||||| ||||| || || Sbjct 1911926 GCCTTCACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCGGTG 1911867 Query 42186 AGCGTCTTTACAAAGATTTGCAT 42208 |||||||| || ||||| ||||| Sbjct 1911866 AGCGTCTTAACGAAGATCTGCAT 1911844 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || | || ||||| |||| || |||||||| ||||| || Sbjct 1911526 TCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCAGCAAAG 1911467 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||||| ||||| | || | | ||||||||| ||| || |||| | Sbjct 1911466 ATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTCGCCTTGACATTG 1911407 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || || || |||| |||||| || || || || | ||||| || Sbjct 1911406 TCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTCTTGACG 1911347 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 1911346 AAGATTTGCAT 1911336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212711727920