Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 seq6 102 8e-17 seq1 96.9 3e-15 >seq9 Length=3088601 Score = 102 bits (112), Expect = 8e-17 Identities = 143/197 (73%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||| ||||| || || |||| | Sbjct 2856284 GACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCA 2856343 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || ||||| ||||| ||||| |||||||| ||||| ||| | || | || Sbjct 2856344 AAGATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTGAC 2856402 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | || || ||||| | || | ||| ||||| || || || | Sbjct 2856403 ATTG-TCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTACCCGTGAGGGTCT 2856461 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 2856462 TGACGAAGATCTGCATG 2856478 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || |||||| | || || || | | | Sbjct 2856567 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAA 2856626 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAAT 138540 ||| ||||||||||| ||||| || || || || ||||| ||| | || | || || Sbjct 2856627 GATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACAT 2856685 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||||| ||||| ||||||| ||| | || || || |||| || || Sbjct 2856686 TG-TCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTC 2856744 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 2856745 ACAAAGATCTGCAT 2856758 >seq6 Length=3889359 Score = 102 bits (112), Expect = 8e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||| | || || |||||| ||||||||||| || || ||||| ||| ||| Sbjct 954657 GCAGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGGTCCTTCGCC 954716 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 || ||||| | | || | | ||| | ||||| || || |||||| ||||||| | Sbjct 954717 GCGATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGTCTCACGTTCTCCAACGAGCTC 954776 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 || || ||||| || || ||||||| |||||||||||||| Sbjct 954777 ATCTCCCGCGATGAGGGCATGCACACCGACTTTGCGTGCCT 954817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 ||||| ||||| || | ||||||||||| | |||||| ||||||| || || Sbjct 954973 GCGCTTCCGGTGTCTCTCATTGGCATGAACGCAGACCTCATGTGTCAGTACATAGAATTC 955032 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCG 52769 || || || || ||| | || |||||| | || ||| | ||| ||||| Sbjct 955033 GTCGCCGACCGGCTGCTCGTCGCCCTCGGGAACGAGAAACACTACGGCGCGACGAATCCA 955092 Query 52770 TTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTC 52829 || || |||||| ||| || ||||| |||||||||||||||| ||||||||||| || Sbjct 955093 TTCGACTTTATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTG 955152 Query 52830 GGCGAGTA 52837 |||||| Sbjct 955153 TCCGAGTA 955160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 52650 GCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTT 52709 || || ||||||| ||| | ||||||||| || | ||| | ||||||||||||| Sbjct 952084 GCACTTCCGGTCGCGCTCATTGGCATGAACTCGAACCTGATGCGTCAGTACATCGAGTTC 952025 Query 52710 GTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGC-AATCC 52768 || || || ||||| | || ||||| | ||| ||| ||||| || | || || Sbjct 952024 GTCGCTGACCGTCTTCTCGTCGCCCTCGGCGATGAGAAGCACTACAACG-TCACGAACCC 951966 Query 52769 GTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGT 52828 || || || ||| ||| || ||||| |||| ||||||||||| || |||||||| || Sbjct 951965 CTTCGACTTCATGGACATGATCTCGCTCCAGGGGAAGACCAACTTCTTTGAGAAGCGTGT 951906 >seq1 Length=4437623 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || || || ||| || || || || || | | Sbjct 1911529 GATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCAGCA 1911470 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||||||||||||||| || ||||| || ||||| ||| || || | | Sbjct 1911469 AAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTCGCCTTGACA 1911410 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||||| ||||||| ||| | ||| || || |||| || || Sbjct 1911409 TTG-TCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTCTT 1911351 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 1911350 GACGAAGATTTGCAT 1911336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | | |||||||||| || |||||||||||| | Sbjct 1911842 CCACCACGCAGACGGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1911783 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| || ||||| || | | |||| | || || ||||| || || Sbjct 1911782 AGAGTGCGACCGTCCTCAAGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGG 1911723 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || || | | || | ||||| | ||||| || Sbjct 1911722 ATGCCTTCCTTATCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGAGGACTCGACT 1911663 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || || |||| ||| || || || ||||||||| Sbjct 1911662 TCCAGAGTGATAGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 1911615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262319357360