Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 seq6 111 1e-19 seq9 102 8e-17 >seq1 Length=4437623 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 1911842 CCACCACGCAGACGGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1911783 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||||||||| || ||||||| || ||||| ||||| || Sbjct 1911782 AGAGTGCGACCGTCCTCAAGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGG 1911723 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||| ||| ||| ||| ||||| |||| |||| ||||| | |||||| Sbjct 1911722 ATGCCTTCCTTATCCTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCTGAGGACTCGAC 1911664 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | || ||||| |||| ||| || || || ||||||||| Sbjct 1911663 TTCCAGAGTGATAGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCATG 1911615 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||||||| | || || ||| || ||||| || || Sbjct 1911304 GTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGGCCATCCTCAAGCTGCTTGCCC 1911245 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || ||||| || || || || ||||||||||| ||| || |||| Sbjct 1911244 GCGAAGATGAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTTGCCTTG 1911185 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| | ||| || |||| ||| | ||| ||||| || || || Sbjct 1911184 ACGTTATCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTC 1911125 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 1911124 TTGACAAAGATCTGCATG 1911107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 126905 ACCAA-ATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| ||| | ||||| || || ||||| ||||| || || ||| ||| || || Sbjct 1911545 ACCAAGATGCAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTC 1911486 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| |||| | ||||| || || || || || ||||||||||| Sbjct 1911485 AAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTG 1911426 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| ||| ||||| | || | ||||| | ||| || |||| || | ||| || Sbjct 1911425 GATCTTCGCCTTGACATTGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTT 1911366 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| || || || || || ||||| Sbjct 1911365 TCCGGTCAATGTCTTGACGAAGATTTGCAT 1911336 >seq6 Length=3889359 Score = 111 bits (122), Expect = 1e-19 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 47385 GCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATC 47444 || ||||| || || | ||| | | || |||||||| || | ||| | ||||||| Sbjct 954967 GCAGAGGCGCTTCCGGTGTCTCTCATTGGCATGAACGCAGACCTCATGTGTCAGTACATA 955026 Query 47445 GAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAG 47504 ||||| ||||||||||| |||||||| || | | | ||| || || || | Sbjct 955027 GAATTCGTCGCCGACCGGCTGCTCGTCGCCCTCGGGAA---CGAGAAACACTACGGCGCG 955083 Query 47505 A---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 | |||||||||| |||||| ||| || |||||| |||||||||||||||| |||||| Sbjct 955084 ACGAATCCATTCGACTTTATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAG 955143 Query 47562 AAGCGCGT 47569 |||||||| Sbjct 955144 AAGCGCGT 955151 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 47146 TCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACA 47205 |||| |||||| ||||||||||||||||||||| || ||| || ||||| || | Sbjct 954670 TCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGGTCCTTCGCCGCGATCTTCTGGC 954729 Query 47206 TGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACG 47265 | || | || | ||||| || |||||||| ||||||||| ||||| | || | Sbjct 954730 TCAAGAAGCGCGGCTTGATGCCTGGTCTCACGTTCTCCAACGAGCTCATCTCCCGCGATG 954789 Query 47266 AAGGCCTGCACACCAACTTTGCCTGTCT 47293 | ||| |||||||| ||||||| || || Sbjct 954790 AGGGCATGCACACCGACTTTGCGTGCCT 954817 >seq9 Length=3088601 Score = 102 bits (112), Expect = 8e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || |||||||| | ||||||| ||| || ||||| || || ||| | Sbjct 2856058 CTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 2856117 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTT 127040 || | |||||||| ||||| || || |||||||||||| ||| || ||| | ||| Sbjct 2856118 AATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 2856177 Query 127041 GTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 127100 | |||| ||||||| ||| || || | ||| | || || |||||||| || || | Sbjct 2856178 G-TCGATCGTGTCCGACGACTCAACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTGA 2856236 Query 127101 CAAAAATCTGCAT 127113 |||| |||||||| Sbjct 2856237 CAAAGATCTGCAT 2856249 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | |||||| || || | ||| || ||||| | Sbjct 2856567 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAA 2856626 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||| | ||||| ||||| || || ||||||||||||||| || || ||||| | Sbjct 2856627 GATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATT 2856686 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| | | |||||| |||| || | || |||||||||| || || || Sbjct 2856687 GTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTCAC 2856746 Query 127102 AAAAATCTGCAT 127113 ||| |||||||| Sbjct 2856747 AAAGATCTGCAT 2856758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500722731120