Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 109 5e-19 seq9 87.8 2e-12 >seq1 Length=4437623 Score = 109 bits (120), Expect = 5e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | || || || || || || || ||||| ||||| || |||||| Sbjct 1911337 ATACCGCCGCGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCG 1911278 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || ||| | || | ||||||||||||||| Sbjct 1911277 GAAAGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGC 1911218 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || ||||| || ||| |||| || | || | |||||| |||||||| Sbjct 1911217 GGGATACCCTCCTTGTCTTGGATCTTTGCCTTGA-CGTTATCGATGGTGTCCGAAGACTC 1911159 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || | ||| ||||| || || || || ||||| || ||||| ||| || Sbjct 1911158 AACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCATGCCGCCAC 1911100 Score = 102 bits (112), Expect = 7e-17 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAATT 45195 || || ||||| ||||| ||||| || || ||| ||| | | || || || | | Sbjct 1911818 TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCG--GACAGAGTGCGACCGTCCTCAAGCT 1911761 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 ||||||| || | ||||| ||||||||||| ||||| |||||||| ||||| || || | Sbjct 1911760 GTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGGATCT 1911701 Query 45256 TTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 | |||| || | || | ||||| || ||||||||||| ||||| | || ||||| Sbjct 1911700 TCGCCTTGA-CGTTGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTTGCCC 1911642 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| || || || || ||||| Sbjct 1911641 GTCAAAGTCTTCACGAAGATCTGCAT 1911616 >seq9 Length=3088601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| ||||| || || ||| || ||| | || ||||| || || || || | Sbjct 2856568 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCAGCAAAG 2856627 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || | || || || ||||| |||||||| || || || ||||| || |||| Sbjct 2856628 ATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTG 2856687 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | |||||||||||||||||| ||||| || | || |||||||| | || || ||| Sbjct 2856688 TCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTCTTCACA 2856747 Query 45330 AAAATTTGCAT 45340 || || ||||| Sbjct 2856748 AAGATCTGCAT 2856758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003126549480