Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 156 5e-33 seq1 134 2e-26 seq12 82.4 9e-11 >seq9 Length=3088601 Score = 156 bits (172), Expect = 5e-33 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| || |||| || |||||||| ||||| ||||| || || || ||||| | Sbjct 2856034 ACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGACC 2856093 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||||||||| || | |||||||||||||| ||| | | |||||| Sbjct 2856094 ATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTT 2856153 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| ||| | ||| | | | |||||| ||| || || |||| |||| Sbjct 2856154 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAGGGTGA 2856212 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || ||||| || || |||||||| |||||| Sbjct 2856213 TGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCATT 2856250 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| ||||||||||||||||| || Sbjct 2856286 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAA 2856345 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | | ||||||||| |||||| ||||| | Sbjct 2856346 GATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATT 2856405 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||||| || |||| || || || || ||||| || || || || Sbjct 2856406 GTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGAC 2856465 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 2856466 GAAGATCTGCAT 2856477 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| ||||||||||| || ||||| |||| || | ||||||||| Sbjct 2856562 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGCTTGCCA 2856621 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || || || | ||||| || || | || | || |||||||||| ||||| |||| Sbjct 2856622 GCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTG 2856681 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || || || || | ||||||||| ||||| |||| || Sbjct 2856682 ACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTCAAGGTC 2856741 Query 46577 TTAACAAAGATTTGCAT 46593 || |||||||| ||||| Sbjct 2856742 TTCACAAAGATCTGCAT 2856758 >seq1 Length=4437623 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || ||||| || || || || Sbjct 1911807 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCAAGCTGTTTTCCCGCAAA 1911748 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || |||||||||| ||| | || ||||| ||| ||||||| ||||| ||| Sbjct 1911747 GATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGGATCTTCGCCTTGA-CGT 1911689 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| ||||| || |||||||||| || || | Sbjct 1911688 TGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTTGCCCGTCAAAGTCTTCA 1911629 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 1911628 CGAAGATCTGCAT 1911616 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 || |||| || |||||||| ||||| |||||||| || || || || |||| || | | Sbjct 1912049 AGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAAC 1911990 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 ||||| || ||||| || | |||||||||||| | || | || |||||||||| ||| Sbjct 1911989 TGCTTCCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATC 1911930 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 ||| ||| | | | | ||| ||| || || || |||| ||||| ||||| || Sbjct 1911929 TTCGCCTTCACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCG 1911870 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| ||||| ||||| Sbjct 1911869 GTGAGCGTCTTAACGAAGATCTGCAT 1911844 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || || || | ||| |||||| ||||| ||||| ||||| ||||| || | Sbjct 1911323 ACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGGCC 1911264 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||| ||||| || | ||| |||||||| | ||| | | |||||| Sbjct 1911263 ATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATACCCTCCTT 1911204 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| | | | ||||| || || || || | ||||| Sbjct 1911203 GTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAACCTCGAGGGTGAT 1911144 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || |||||||| ||||| Sbjct 1911143 CGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1911108 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||||| ||| ||||| || || |||||||| || | || || |||| || ||| Sbjct 1911541 AGATGCAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGC 1911482 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| || || || | ||||| ||||| | ||| | | ||||||||| |||| Sbjct 1911481 TGCTTGCCAGCAAAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATC 1911422 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 ||| ||||| | | | ||||| || || || || | |||||| || || || Sbjct 1911421 TTCGCCTTGACATTGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCG 1911362 Query 46568 GTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || ||||||||||| Sbjct 1911361 GTCAATGTCTTGACGAAGATTTGCAT 1911336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 3824916 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 3824975 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| |||||||||||||| Sbjct 3824976 GATCAGGCGCTGCTGGTCGG 3824995 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||| ||| ||||| ||||| |||||||| || || || || | || ||| Sbjct 1911088 ACGAGGTGCAGCGTAGATTCCTTCTGGATGTTGTAGTCCGACAGGGTCCGGCCATCCTCG 1911029 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 ||||||||||| ||||| |||| |||||||||||||| Sbjct 1911028 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGG 1910992 >seq12 Length=2614590 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| || || || | || || Sbjct 1420409 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCATCCTC 1420350 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 |||||||||||| ||||| |||| |||||||||||||| Sbjct 1420349 GAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCGG 1420312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238308148760