Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq7 217 2e-51 seq5 93.3 5e-14 >seq7 Length=3674663 Score = 217 bits (240), Expect = 2e-51 Identities = 557/857 (65%), Gaps = 56/857 (7%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || ||||| | ||| || || ||||| | || ||||| || || ||||| |||||||| Sbjct 2540379 TCGCCCGTGAGGATAGCAGCCTGGACGGCAGCACCGTACGCAACGGCCTCGTCGGGGTTG 2540320 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACAT-TTGTTGAATTTTCGG 7128 |||| || || | || || ||||| || | || || | | ||| || || Sbjct 2540319 ATCGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGACACGAGCTTGACGACACGG-GG 2540261 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || || || || | ||||| || | ||| | | || |||||||| | Sbjct 2540260 GATACGAGTGGAACCGCCAACGAGGACGATCTCGTGCACCTGGGCCTTGTCGATCTTCGC 2540201 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 ||| ||||| || ||||| || || | | ||||| | ||| || ||||| Sbjct 2540200 GTCACGAAGGACCTTCTCGACGGGCTCAAGGGTGCTGCGGAAGAGGTCTTGGCAGAGTTC 2540141 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 ||| ||||| ||||| || | || || ||||| |||| ||| ||| | | ||||| || Sbjct 2540140 CTCGAAACGCGCACGCGTGAGCGAGGTGTAGAAGTCAATGCCCTCGAAGAGGGAATCGAT 2540081 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||| ||||| || || || | || || | ||| ||||| || ||||| || ||||| || Sbjct 2540080 TTCGATGGTGGTCTGGGCGGCGGAGGAGAGCGTACGCTTGGCACGCTCGCAAGCCGTACG 2540021 Query 7369 TAAACG---------ACGAAGG-----------------GCACGCGGGTTACCG------ 7396 | ||| |||| || | ||| | ||| || Sbjct 2540020 CAGACGACGCAGAGCACGAGGGTTAGAGGAGAGATCTAAGAACGGTGATTAGCGTACGCT 2539961 Query 7397 -------------------GAA---ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA 7434 ||| ||| | ||||| || || || || ||||| | Sbjct 2539960 TGAGAAACACGCAGTCGAAGAACACATACCCTTCTTGTGCTTCCGCTTGAACTCCTGGAC 2539901 Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| | ||| | ||||| || |||||||| | ||| || || || || || Sbjct 2539900 GAAGTGGTTGACGAGGCGGTTGTCGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCAGT 2539841 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| || |||||||| | || ||| | | | || ||||| || || || || Sbjct 2539840 AGCCTTGACCTCGAAGATACCCTCCTCGATGGTGAGGAGAGACACATCGAAGGTTCCTCC 2539781 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGC 7614 || || || || ||||| ||||| ||| | | | ||||| ||||| || || || Sbjct 2539780 GCCAAGATCGAAGATGAGGACGTTGCGCTCGCCCTGGGTCTTCTTGTCGAGGCCATAAGC 2539721 Query 7615 GATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGC 7674 ||| || |||||||| || || || || |||||||| ||| ||||| | || || | Sbjct 2539720 GATGGCAGCCGCCGTGGGCTCGTTGATGATACGAAGGACGTTGAGGCCGGAGATGGTACC 2539661 Query 7675 CGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 || || || || ||||| || || || ||||| ||||||||||| || || || || || Sbjct 2539660 TGCGTCCTTGGTTGCTTGACGCTGGGAGTCGTTGAAGTAGGCCGGCACGGTGACAACGGC 2539601 Query 7735 GTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 | |||||| | |||||| |||||||| ||||| || ||||| || || || ||||| Sbjct 2539600 GGACGTGACGGTACCACCGAGGTACGATTCGGCGATCTCCTTCATCTTCGTGAGGACCAT 2539541 Query 7795 CGATGAAATCTCTTCAG 7811 || || ||||| |||| Sbjct 2539540 GGAGGAGATCTCCTCAG 2539524 Score = 132 bits (146), Expect = 6e-26 Identities = 189/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || || ||||| ||||| |||||| ||| Sbjct 1555737 TCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTCGCCTTGACGGCAAAGACACCA 1555796 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | | || ||||| || ||||| ||||| || || || ||||| ||| Sbjct 1555797 CCAGTGATGTTGAGGAGGGAGACATCGAAAGTACCTCCACCGAGATCGAAGATGAGGACG 1555856 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | | | || |||||||| || ||||| || || || || || Sbjct 1555857 TTCTTCTCAGCACTTGACTGGCGGTCAAGACCGTAGGCAATAGCGGCAGCGGTGGGCTCG 1555916 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| ||| | || ||||| || | | ||||| || ||||| | ||| Sbjct 1555917 TTGATGATACGGAGAACCTCGAGACCAGCGATGGCACCAGCATCCTTGGTCGCGAGACGT 1555976 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGAC 7722 || |||||||| |||||||| || || Sbjct 1555977 TGAGAATCGTTGAAGTAGGCGGGCAC 1556002 >seq5 Length=1948569 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 ||||| || || || | || || || || ||||| || || | ||| || || ||| Sbjct 562946 TCGAGGCCATATGCCAACGCAGCAGCAGTAGGTTCGTTGATGACACGGAGCACGTCGAGG 563005 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||||||||| | || ||||| || ||||| ||||| | |||||| |||||||| || Sbjct 563006 CCAGCAATAGTACCGGCGTCTTTTGTTGCTTGCCGTTGGGCATCGTTGAAGTAGGCGGGT 563065 Query 7721 ACCGTTACGACCGCGT 7736 ||||| ||||| |||| Sbjct 563066 ACCGTCACGACGGCGT 563081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132696790920