Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 116 5e-21 >seq6 Length=3889359 Score = 116 bits (128), Expect = 5e-21 Identities = 189/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| |||||| ||||| || || |||| ||||| || |||||| | Sbjct 952522 CTCATCGACACGTATATCAAGGACCCCGCACAGCGCGAGCACCTCTTCGATGCCATCGAG 952463 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAA--AG 102164 || | || || ||| | ||||| || ||||||||| | ||| | | |||| || Sbjct 952462 ACTATCCCCTGCATTAAGAAGAAGGCTGATTGGGCTCTTCGCTGGATCTCGGACAAGGAG 952403 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || |||| ||||| || || | || || || || ||||||||||| |||||| Sbjct 952402 TCAG---CCTTCGCTGAACGCCTTGTAGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCT 952346 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || || ||| | | || | |||||||||||||| || | ||||| || ||| |||| Sbjct 952345 GGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGCCTCACCTTC 952286 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGG 102313 || |||||||| ||||| || || ||||| Sbjct 952285 TCTAACGAGCTCATCTCCCGCGATGAGGG 952257 Score = 109 bits (120), Expect = 7e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| ||| |||| || || || ||||| |||||||||| || ||||| Sbjct 954653 CTTCGCAGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGGTCCTT 954712 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | ||| || | |||||||||||||| || | ||||| |||||| ||||||||||| Sbjct 954713 CGCCGCGATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGTCTCACGTTCTCCAACGA 954772 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 ||| ||||| || || ||||| | ||| || |||||| Sbjct 954773 GCTCATCTCCCGCGATGAGGGCATGCACACCGACTTTGCG 954812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742299129360