Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 seq1 95.1 1e-14 seq12 82.4 9e-11 seq9 82.4 9e-11 >seq6 Length=3889359 Score = 102 bits (112), Expect = 1e-16 Identities = 327/502 (65%), Gaps = 8/502 (2%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||||||||||| ||| |||| || |||||||| | || | ||| Sbjct 952257 CCCTCATCGCGGGAGATGAGCTCGTTAGAGAAGGTGAGGCCAGGCATCAAGCCGCGCTTC 952316 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| ||| ||||| || ||||| ||||| || ||||| Sbjct 952317 TTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAAAAGATACCCTCGACGGCAGCGAAG 952376 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTC---GAACCACTTGAGAGCCCAGTTG 119690 || | || || ||||| || | | |||||| || ||| |||||||| | Sbjct 952377 GCTACAAGGCGTTCAGCGAAGGCTGACTCCTTGTCCGAGATCCAGCGAAGAGCCCAATCA 952436 Query 119691 GCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCA 119750 ||||| || |||||||||| ||| | |||||| ||||| || |||| | || Sbjct 952437 GCCTTCTTCTTAATGCAGGGGATAGTCTCGATGGCATCGAAGAGGTGCTCGCGCTGTGCG 952496 Query 119751 CCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCAT-TTCATT 119809 ||||| ||||| | || ||||| ||||| |||||| |||| | | ||| Sbjct 952497 GGGTCCTTGATATACGTGTCGATGAGGAGCGAGTACGTCTCAGAGTGAATGTTCTCCATC 952556 Query 119810 GTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATT 119869 || ||| || | || || |||| || |||| || || |||| | ||| Sbjct 952557 ATG-ATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGCCGCCTGGACCTCGTTGGAGAAACG 952615 Query 119870 GTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTT 119929 | | || || || || || ||||| | |||||||| || | | || | Sbjct 952616 CTCTACCAGGTTCTCGTTGACGATACCGTCGGAGGCGGCGAAGAACGCCAGAACGTGCGA 952675 Query 119930 TATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATATCTTTAGACAA 119986 ||||| | |||||| | |||||| ||| |||||||| | || ||| || |||| Sbjct 952676 GATGAAGTGGCGTTCATCGTTGTTGAGGCGGTTGTTCCAGTCATGCAGATCCTTGGACAG 952735 Query 119987 GTCCACCTCTTCAGCTGTCCAG 120008 ||||| || ||||| |||||| Sbjct 952736 GTCCATTTCCTCAGCGGTCCAG 952757 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||||||||||| || ||| || |||||||| | || | ||| Sbjct 954793 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGACCAGGCATCAAGCCGCGCTTC 954734 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| || || || || ||||||| |||||| || |||||| Sbjct 954733 TTGAGCCAGAAGATCGCGGCGAAGGACCCGGAGAAGAAGACGCCCTCGACGGCGGCGAAC 954674 Query 119634 GCGAATAGACGCTCAGCAAA---AGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTG 119690 |||| || ||||| || || | || || | | ||| ||| || ||||||| | Sbjct 954673 GCGACGAGGCGCTCTGCGAAGACGGAGCGCGAGTCGGCGATCCAGCGCAGGGCCCAGTCG 954614 Query 119691 GCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||||| ||| | | |||||||| || | ||| || ||||| || Sbjct 954613 GCCTTGCGCGCGACGCAGGGGATGGTGTTGATCGCGTCGAACAG 954570 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 2661046 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 2661105 Query 136775 TTGG 136778 |||| Sbjct 2661106 TTGG 2661109 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 2675173 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 2675114 Query 136775 TTGG 136778 |||| Sbjct 2675113 TTGG 2675110 >seq1 Length=4437623 Score = 95.1 bits (104), Expect = 1e-14 Identities = 220/325 (68%), Gaps = 9/325 (3%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 || |||| |||||||| || ||| |||||||||| |||||| || ||||| ||||| Sbjct 2840355 TGCCGAAGCCGTCCATCTCGACGAGGAGCTGGTTGAGCGTCTGCTCGCGCTCGTCGTTCC 2840296 Query 11648 AGGGCATACCACCTGCCGAAC----GCTTCTTACCGACAGCGTCAATCTCATCGATGAAT 11703 | || | | | |||| | || ||| |||| ||||| ||||| |||||||| Sbjct 2840295 CGC-CAAAGCCCTTGCCCTTCCCGCGCGCCTTGCCGATGGCGTCGATCTCGTCGATGAAC 2840237 Query 11704 ACGATACACGGTTGGTTGGCACGTGCCTGTT-CGAAAAGTTCACGTACACGCTTCGCTCC 11762 ||||| |||| ||| | || |||| |||| || || || || || | || Sbjct 2840236 ACGATCGACGGCGCGTTCTT-CTTGGCTGTCGCGAAGAGGTCGCGCACGCGTGAGGAGCC 2840178 Query 11763 AACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAAT-GAAGGGAACATTAG 11821 || || ||||| | ||| ||||| | | | |||| ||| || | ||| || || | Sbjct 2840177 GACGCCGACGAAGAGCTCGACGAACTCGGAGCCAGA-CACGGAGTAGAACGGGACGCCCG 2840119 Query 11822 ACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAA 11881 ||| || ||| | || || || || |||||||||||||| || | ||| | ||| | Sbjct 2840118 CCTCGCCCGCGGTCGCCTTCGCAAGCAGGGTCTTACCCGTACCCGGGGGACCCGAGAGGA 2840059 Query 11882 GGGCGCCACGGGGGATCTTGGCACC 11906 ||| || || || ||||| || || Sbjct 2840058 TGGCCCCGCGAGGAATCTTTGCGCC 2840034 >seq12 Length=2614590 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 2350393 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 2350334 Query 136775 TTGG 136778 |||| Sbjct 2350333 TTGG 2350330 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 2415456 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 2415515 Query 136775 TTGG 136778 |||| Sbjct 2415516 TTGG 2415519 >seq9 Length=3088601 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 254134 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 254193 Query 136775 TTGG 136778 |||| Sbjct 254194 TTGG 254197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975904291400