Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 5e-14 >seq6 Length=3889359 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||| ||||| || || || || |||||| ||||| ||||| | || |||||| Sbjct 952257 CCCTCATCGCGGGAGATGAGCTCGTTAGAGAAGGTGAGGCCAGGCATCAAGCCGCGCTTC 952316 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | | ||| || || ||||| ||||||||||| || || || Sbjct 952317 TTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAAAAGATACCCTCGACGGCAGCGAAG 952376 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCA-AACCATTTCATTGCCCATTT 117470 || | |||||| || ||||||| || | |||| | | ||| | ||||| | Sbjct 952377 GCTACAAGGCGTTCAGCGAAGG-CTGACTCCTTGTCCGAGATCCAGCGAAGAGCCCAATC 952435 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 117520 |||||||||| ||| || || | ||| | |||||| || || | |||| Sbjct 952436 AGCCTTCTTCTTAATGCAGGGGATAGTCTCGATGGCATCGAAGAGGTGCT 952485 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | |||||||| ||||| || || || || ||||| || || Sbjct 954811 GCAAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGACCA 954752 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | || |||||||| | ||| | || ||| ||| |||||||||||||||| Sbjct 954751 GGCATCAAGCCGCGCTTCTTGAGCCAGAAGATCGCGGCGAAGGACCCGGAGAAGAAGACG 954692 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||||| || || ||||| | |||||||| |||||| Sbjct 954691 CCCTCGACGGCGGCGAACGCGACGAGGCGCTCTGCGAAG 954653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980704128120