Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 170 4e-37 seq9 147 5e-30 >seq1 Length=4437623 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || ||||||||||||||| ||||| || || || |||||||||| |||||| | Sbjct 1911326 GAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACG 1911267 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| || |||||||| || |||||||| || ||||| ||||| || || || || || Sbjct 1911266 GCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATACCCTC 1911207 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || ||| ||||||||| || |||||||||||| || || || ||||| Sbjct 1911206 CTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAACCTCGAGGGT 1911147 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | || || || || | ||||| Sbjct 1911146 GATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1911108 >seq9 Length=3088601 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || || ||||| || | ||||| | || |||||| Sbjct 2856269 ACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCTTCG 2856328 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 2856329 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGA 2856388 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || || |||||||| ||| || || || |||| |||||| Sbjct 2856389 ATCTTCGCCTTGACATTGTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTA 2856448 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 2856449 CCCGTGAGGGTCTTGACGAAGATCTGCAT 2856477 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||| ||| || || || |||||||| | || || | ||||| ||| Sbjct 2856041 ACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGACCATCCTCG 2856100 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || || || || ||||| || ||||| || || ||||| || Sbjct 2856101 AGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGG 2856160 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || |||||||| || || || ||||| | ||||| Sbjct 2856161 ATCTTGGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCCAGGGTGATGGTCTTC 2856220 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| || || || || | |||||| Sbjct 2856221 CCGGTCAGGGTCTTGACAAAGATCTGCATT 2856250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481415201971