Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 seq1 100 2e-16 >seq9 Length=3088601 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || || ||||| || || || | ||| |||| ||||||||| Sbjct 2856556 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGC 2856615 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || ||||||||||||| ||||| |||||||||||| |||||| Sbjct 2856616 TTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTG 2856675 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||| ||||| | ||| || || || || ||| Sbjct 2856676 GCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTC 2856735 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| |||||||| Sbjct 2856736 AAGGTCTTCACAAAGATCTGCAT 2856758 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||| | || || |||||||| || || || |||||||| || Sbjct 2856023 CCGCCACGAAGACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAG 2856082 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || || | |||||| ||||| || || || ||||| || || | ||| Sbjct 2856083 AGCGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGA 2856142 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | | || |||| ||| ||| Sbjct 2856143 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACC 2856202 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||| || || ||||| |||||||| Sbjct 2856203 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCAT 2856249 >seq1 Length=4437623 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || || ||||| ||||| || | || |||| ||||||||| Sbjct 1912046 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAACTGC 1911987 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || || || ||||| || |||| ||||| |||||||||||| ||||| Sbjct 1911986 TTCCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATCTTC 1911927 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||| ||||||| || || ||||| || || Sbjct 1911926 GCCTTCACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCGGTG 1911867 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 1911866 AGCGTCTTAACGAAGATCTGCAT 1911844 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| || || | | ||| |||| || | |||||| || ||||| Sbjct 1911526 TCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCAGCAAAG 1911467 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || |||||||| |||| || | ||||||||||| ||||| || ||| Sbjct 1911466 ATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTCGCCTTGACATTG 1911407 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | ||| ||||| | ||| ||||| ||||| ||||| || || || Sbjct 1911406 TCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTCTTGACG 1911347 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 1911346 AAGATTTGCAT 1911336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937539645199