Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 277 3e-69 >seq6 Length=3889359 Score = 277 bits (306), Expect = 3e-69 Identities = 399/560 (71%), Gaps = 11/560 (2%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| |||||| ||||| |||||| ||| || || ||| ||||||| |||| |||| Sbjct 952228 AGAGCAAGCAGGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTAGAGA 952287 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 || ||| |||||||| | || | || ||||||||||| || | ||||||||||||| Sbjct 952288 AGGTGAGGCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCAG 952347 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||| ||||| ||||| || || ||||| || || | || |||| | | | || Sbjct 952348 AGAAAAAGATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAAGGCTGACTCCT 952407 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| ||||||||| ||| ||||| || ||||||||||| ||||| || || ||||| | Sbjct 952408 TGTCCGAGATCCAGCGAAGAGCCCAATCAGCCTTCTTCTTAATGCAGGGGATAGTCTCGA 952467 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 |||| |||||| | || || || | | |||| | ||| || |||| ||| Sbjct 952468 TGGCATCGAAGAGGTGCTCGCGCTGTGCGGGGTCCTTGATATACGTGTCGATGAGGAGC- 952526 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | |||| |||||||||| | ||||| || ||||||||| ||||||||| | | Sbjct 952527 --GAGTACGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCG 952584 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 |||| | |||| || || ||||||| | ||| | ||| ||||| ||||| || || | Sbjct 952585 CCTCGGCCGCCTGGACCTCGTTGGAGAAACGCTCTACCAGGTTCTCGTTGACGATACCGT 952644 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG 48599 | || || || ||||| || || || || | ||| ||||| || | || | |||| | Sbjct 952645 CGGAGGCGGCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCATCGTTGTTGAG-G 952703 Query 48600 C----ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGAC 48655 | |||||| | || | || ||| |||||||| ||| || | ||||||||||| Sbjct 952704 CGGTTGTTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGGTCCAGAAGGAT 952763 Query 48656 GCGAGTGCTTTTTTGTACAT 48675 || || || |||||||| Sbjct 952764 GCCTCGGCCTTCTTGTACAT 952783 Score = 239 bits (264), Expect = 8e-58 Identities = 408/587 (70%), Gaps = 16/587 (3%) Strand=Plus/Minus Query 48106 GCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCT 48165 ||||||||| | | | |||| ||| |||||||| |||||| ||| || || ||| Sbjct 954836 GCGCAGGTGGTGGA---ACAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCATCGCGGGA 954780 Query 48166 GATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAAT 48225 ||||||| |||||||||| |||||||||||| | || | || ||||||||||| || Sbjct 954779 GATGAGCTCGTTGGAGAACGTGAGACCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGAT 954720 Query 48226 TGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTC 48285 || ||||| || || |||||||||| |||||| || || ||||||||| ||| | ||| Sbjct 954719 CGCGGCGAAGGACCCGGAGAAGAAGACGCCCTCGACGGCGGCGAACGCGACGAGGCGCTC 954660 Query 48286 TCCGA--AAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTG 48343 | ||| | | |||| | ||| | ||||||| || |||||||| ||||| | | Sbjct 954659 TGCGAAGACGGAGCG--CGAGTCGGCGATCCAGCGCAGGGCCCAGTCGGCCTTGCGCGCG 954602 Query 48344 ATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACA 48403 | ||| || || || | || || ||| || | || || | | ||| || Sbjct 954601 ACGCAGGGGATGGTGTTGATCGCGTCGAACAGGAACGCGCGCTGCGCGGGGTCGCGGACG 954542 Query 48404 TAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGG 48460 || || |||| ||| | |||| |||| |||||||| ||||| || ||||||| Sbjct 954541 TACGTGTCGATGAGGAGC---GAGTACGTCTCCGAGTGCACGTTCTCGATCATGATCTGG 954485 Query 48461 AACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGA 48520 || ||||||||| | ||||| |||||||||| ||||||| | ||| | || Sbjct 954484 AAGCCGTAGAAGCAGCGCGCCTCGGCGGCCTGCACTTCGTTGGAGAACCGCTCGACGAGG 954425 Query 48521 TTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGG 48580 ||||| ||||| ||||| || || || || |||||||| ||||| | | ||| || Sbjct 954424 TTCTCGTTGACGATCCCGTCCGAGGCGGCGAAGAAGGCGAGGACGTAGGAGACGAAGTGC 954365 Query 48581 CGCTCGTTGTGGGTGAG---AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 |||||||| ||||||| | ||||| || | ||| | | ||||| | ||| Sbjct 954364 TGCTCGTTGGGGGTGAGCTTGGTCGTCCAGTCCATGAGGTCGTAGGAGAGGTCGATCTCT 954305 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || ||||||||||| || | || | |||||||| |||||| Sbjct 954304 TCGACGGTCCAGAAGGATGCTTGGGCGTCCTTGTACATCTGCCATAT 954258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532648625920