Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 5e-14 seq1 91.5 2e-13 >seq6 Length=3889359 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 64982 AGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAA 65041 |||| | || || |||||| | ||| | || || ||| |||||||||| | ||||| Sbjct 952485 AGCACCTCTTCGATGCCATCGAGACTATCCCCTGCATTAAGAAGAAGGCTGATTGGGCTC 952426 Query 65042 TGAAATGGTT-TGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGT 65100 | ||| | | |||| | || ||||||| || |||||| | || || || Sbjct 952425 TTCGCTGGATCTCGGACAAGGAGTCAG-CCTTCGCTGAACGCCTTGTAGCCTTCGCTGCC 952367 Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 || ||||||||||| ||||| || || ||| | | || | ||| | |||||||| || Sbjct 952366 GTCGAGGGTATCTTTTTCTCTGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGC 952307 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 | ||||| ||||| |||||| || || || || ||||| |||||||| Sbjct 952306 TTGATGCCTGGCCTCACCTTCTCTAACGAGCTCATCTCCCGCGATGAGGG 952257 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||| |||||||| | ||||| || || ||||| |||||||||||||||| || Sbjct 954653 CTTCGCAGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGGTCCTT 954712 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 | ||| || | ||| | |||||||| || | ||||| || || ||||| || || Sbjct 954713 CGCCGCGATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGTCTCACGTTCTCCAACGA 954772 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || ||||| |||||||| | ||| || ||||| Sbjct 954773 GCTCATCTCCCGCGATGAGGGCATGCACACCGACTTTGC 954811 >seq1 Length=4437623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 204/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 13560 CCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACA-ATCTGGAAAGTGTACTCTCATT 13618 |||||||| ||||| ||||| || || || | || | || | || || |||||| Sbjct 521138 CCAAGTTGTCAGACGCAAACAACGCTGGAACT-CGCAGAGCTTCGGACTGCACGCTCATT 521196 Query 13619 GTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGT 13678 |||| || ||||| || || | | | || | || |||||| ||||||||||||| Sbjct 521197 CTCACTGAAGGTGACTCCGCCAGGGCGTTAGCAATCGCCGGTCTCGGTGTCGTTGGTCGT 521256 Query 13679 GATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTG 13738 ||| ||| |||||| ||||| | ||||| ||| ||| ||||| ||||| | Sbjct 521257 GATAACTTCGGTGTTTTCCCGTTGCGCGGCAAACTGCTGAACGTTCGTGACGCAAAGCAC 521316 Query 13739 GCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAA 13798 | ||| | | ||| |||| || | || |||||||||| || || || ||||| Sbjct 521317 GATCAGATTATGAAGAACGAGGAAATCCAGAATATCAAGAAGATTCTGGGCCTGCAACAC 521376 Query 13799 GGAAAAGACTACCAAGATGTTTCTGAACTT--CGCTATGGTCGTCTTATGATTATGACAG 13856 || || ||| || | || | |||| |||||||| ||| | ||| ||||||| | Sbjct 521377 AACAAGGAATACTCGGACG--TCAGCACTTTGCGCTATGGCCGTTTGATGCTTATGACGG 521434 Query 13857 AT 13858 || Sbjct 521435 AT 521436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569503057440