Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 1e-14 >seq1 Length=4437623 Score = 96.9 bits (106), Expect = 1e-14 Identities = 192/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||| | ||||| | ||| ||||| || || || || | ||||| Sbjct 622724 CATCACGTCTTCTAACGCCTTGACGAGACGGCGCTGGATGTAGCCGGTCTCGGCGGTTTT 622665 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || || ||||| || ||||| | |||||| |||| ||||||||||| | ||| | || Sbjct 622664 GACGGCGGTATCGATGAGACCCTCGCGACCAGCCATGGCATGGAAGAAAAACTCCTGGGG 622605 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT-CGGGC-GAATCGTCG 302742 || || | | | | ||| |||| ||||| ||||| |||| ||||| ||| ||| Sbjct 622604 GGTGAGGCCTCGGAGATACGAGTTCTCGACGAAGCCACGGGCCTCCGGGCTGAA--GTCA 622547 Query 302743 AACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCA 302802 ||| || ||||| || || || | | ||||| |||||||||||||||| || Sbjct 622546 TCCTTCGTGAAGTGAGGGAGAGTGCGATGACGGAAGCCGAATGGGATACGCTTTCCTTCG 622487 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||||| || | || | ||||||||| || || Sbjct 622486 ACCGACTGCTGCCCAACACAAACAGACATCTGCGAGATGTT 622446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817354850381