Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 136 9e-27 >seq1 Length=4437623 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || |||||||| | || || || ||| ||| Sbjct 1911111 CAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCTTCGGAC 1911170 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||| ||||| || || || || ||||||| ||| Sbjct 1911171 ACCATCGATAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCGGACCAGCAA 1911230 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || |||||| | || ||||| | ||| | ||||||||||| || Sbjct 1911231 CGCCTCATCTTCGCGGGCAAGCAGCTTGAGGATGGCCGTACTCTTTCCGATTACAACATC 1911290 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||||||||||||| || | || || Sbjct 1911291 CAGAAGGAGTCTACTCTTCACCTTGTTCTGCGTCTCCG 1911328 Score = 96.9 bits (106), Expect = 8e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || |||||||| || ||||| ||||| ||||| || || ||| || || |||| Sbjct 1911859 AAGACGCTCACCGGGAAAACAATCACATTGGAGGTCGAGTCTTCCGATACGATCGACAAT 1911918 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || ||| |||||| || | || |||||| Sbjct 1911919 GTGAAGGCGAAGATACAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTCATCTTC 1911978 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| || || | || || | || |||||| ||||||| ||| Sbjct 1911979 GCTGGGAAGCAGTTGGAGGACGGCCGTACGCTGTCTGACTACAACATCCAGAAGGAGAGC 1912038 Query 206365 ACTCTTCACCTTG 206377 ||||| ||||||| Sbjct 1912039 ACTCTGCACCTTG 1912051 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || ||||||||||||||||||||| ||||||| || || || | | ||| Sbjct 1911328 CGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTA 1911269 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || |||||||| || |||||||| || ||||| || Sbjct 1911268 CGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTG 1911225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820603152973