Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq9 114 1e-20 >seq1 Length=4437623 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || || || |||| || ||||| || |||||||| Sbjct 1911807 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCAAGCTGTTTTCCCGCAAA 1911748 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||||||| |||||||| | || | || ||||| ||| |||||| ||| | || Sbjct 1911747 GATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGGATCTTCGCCTTGAC-GT 1911689 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || || || |||| ||||| || || ||||||||||| |||| Sbjct 1911688 TGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTTGCCCGTCAAAGTCTTCA 1911629 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 1911628 CGAAGATCTGCAT 1911616 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| || | || || || |||| |||| |||||| || Sbjct 1912040 GTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAACTGCTTCCCA 1911981 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || || | ||||||||||||| |||| || |||||||||| ||||| |||| Sbjct 1911980 GCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATCTTCGCCTTC 1911921 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | ||| ||| || || ||||||| ||||| ||||| || || | || Sbjct 1911920 ACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCGGTGAGCGTC 1911861 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 1911860 TTAACGAAGATCTGCAT 1911844 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | ||| || || |||| || |||||||| || ||||| Sbjct 1911526 TCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAAGCTGCTTGCCAGCAAAG 1911467 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| ||||||| || | | ||||||||| |||||| ||| | | | Sbjct 1911466 ATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTCGCCTTGACATTG 1911407 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || || ||||| | ||||||||| || || ||||| || || || Sbjct 1911406 TCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTCCGGTCAATGTCTTGACG 1911347 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 1911346 AAGATTTGCAT 1911336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | || || | || || |||||||| ||||| || Sbjct 1911299 CTCCTTCTGGATGTTGTAATCGGAAAGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAA 1911240 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||||| || | | ||||||||| ||||||| ||| | | Sbjct 1911239 GATGAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTT 1911180 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | |||||||| || ||||| | || || || Sbjct 1911179 ATCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 1911120 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1911119 AAAGATCTGCAT 1911108 >seq9 Length=3088601 Score = 114 bits (126), Expect = 1e-20 Identities = 147/200 (74%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || ||||||||||| | | || || | || || |||||||| || Sbjct 2856053 GTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGACCATCCTCGAGCTGCTTGCCG 2856112 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || || | ||||||||||| | |||| | |||||||||| |||||| |||| Sbjct 2856113 GCGAAAATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTC 2856172 Query 35660 AGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 | |||| | | |||||| ||| || ||||||| ||||| || || || |||| || Sbjct 2856173 A-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAGGGTGATGGTCTTCCCGGTCAGGGT 2856231 Query 35719 TTTCACAAATATCTGCATTC 35738 || ||||| |||||||||| Sbjct 2856232 CTTGACAAAGATCTGCATTC 2856251 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || |||| || |||||||| || ||||| Sbjct 2856286 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCTTCGAGCTGCTTGCCGGCAAA 2856345 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| | ||||||||| ||||| ||| | | | Sbjct 2856346 GATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTGACATT 2856405 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||||| ||||||| || ||||| |||||||| | || || || Sbjct 2856406 GTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTCTTACCCGTGAGGGTCTTGAC 2856465 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2856466 GAAGATCTGCAT 2856477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793526746040