Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 >seq6 Length=3889359 Score = 120 bits (132), Expect = 4e-22 Identities = 367/563 (65%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 |||||||||||||| || | ||||||||| | || | |||||||| || ||| Sbjct 952233 AAGCAGGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTAGAGAAGGTG 952292 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 || |||||||| | || ||||| |||||||| || |||| || ||||| ||||| || Sbjct 952293 AGGCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAA 952352 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT-- 39791 ||||| || || || || || || || ||||| | || || | || || || | Sbjct 952353 AAGATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAAGGCTGACTCCTTGTCC 952412 Query 39792 -GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 ||||| | ||||||||||| |||||||| | || || || || || || ||| Sbjct 952413 GAGATCCAGCGAAGAGCCCAATCAGCCTTCTTCTTAATGCAGGGGATAGTCTCGATGGCA 952472 Query 39851 TTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATAC 39910 | ||||| | | | | || || | ||| || || || | || ||| Sbjct 952473 TCGAAGAGGTGCTCGCGCTGTGCGGGGTCCTTGATATACGTGTCGATGAGGAGCGAGTAC 952532 Query 39911 ATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTA 39970 | || || || ||||| || ||| ||||| || ||||| || || | || || | Sbjct 952533 GTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGCC 952592 Query 39971 ATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 || ||||| || | ||| | || ||| || || || || || || || | Sbjct 952593 GCCTGGACCTCGTTGGAGAAA--CGCTCTACCAGGTTCTCGTTGACGATACCGTCGGAGG 952650 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA----TTTA 40084 |||| || || |||| || || || || | |||||| | ||| | || Sbjct 952651 CGGCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCATC-GTTGTTGAGGCGGTTG 952709 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 |||||||||| | ||| || || | || | ||| ||||| ||||| || || ||||| Sbjct 952710 TTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGGTCCAGAAGGATGCCTCG 952769 Query 40145 GCCTTTTTGTACATGTTCCATAT 40167 ||||| |||||||| | ||| || Sbjct 952770 GCCTTCTTGTACATTTGCCAGAT 952792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908688377320