Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 seq6 89.7 6e-13 >seq1 Length=4437623 Score = 95.1 bits (104), Expect = 2e-14 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 182549 ATCTGTCATAATCATAAGACGACCATAGCG--AAGTTCAGAAACATCTTGGTAGTCTTTT 182606 ||| ||||||| ||| | ||| |||||||| |||| | || | || ||| || || Sbjct 521436 ATCCGTCATAAGCATCAAACGGCCATAGCGCAAAGTGCTGA--CGTCCGAGTATTCCTTG 521379 Query 182607 CCTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTGGTTTGATGTAAGCTGT 182666 ||||| || || || |||||||||| || | || |||| ||| ||| ||| Sbjct 521378 TTGTGTTGCAGGCCCAGAATCTTCTTGATATTCTGGATTTCCTCGTTCTTCATAATCTGA 521319 Query 182667 GCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGTGA 182726 | | ||||| ||||| ||| ||| ||||| | ||||| |||||| ||| | Sbjct 521318 TCGTGCTTTGCGTCACGAACGTTCAGCAGTTTGCCGCGCAACGGGAAAACACCGAAGTTA 521259 Query 182727 TCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCGTG 182786 ||||||||||||||| |||||| || | || | | | || || ||||| || ||| Sbjct 521258 TCACGACCAACGACACCGAGACCGGCGATTGCTAACGCCCTGGCGGAGTCACCTTCAGTG 521199 Query 182787 ACAATGAGAGTACACTTTCCAGAT-TGTGCCGTACCCGCCTTGTTCGCGTCATCCAACTT 182845 | |||||| || || | || | || | || || || ||||| ||||| |||||| Sbjct 521198 AGAATGAGCGTGCAGTCCGAAGCTCTGCG-AGTTCCAGCGTTGTTTGCGTCTGACAACTT 521140 Query 182846 GG 182847 || Sbjct 521139 GG 521138 >seq6 Length=3889359 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | |||||||| ||||| || || || || ||||| ||||| Sbjct 954811 GCAAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGACCA 954752 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | || |||||||| | ||| | || ||| ||| |||||||||||||||| Sbjct 954751 GGCATCAAGCCGCGCTTCTTGAGCCAGAAGATCGCGGCGAAGGACCCGGAGAAGAAGACG 954692 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 ||||| || || ||||| | ||||| || |||||| Sbjct 954691 CCCTCGACGGCGGCGAACGCGACGAGGCGCTCTGCGAAG 954653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 |||||||| ||||| || || || || |||||| || || ||||| | || |||||| Sbjct 952257 CCCTCATCGCGGGAGATGAGCTCGTTAGAGAAGGTGAGGCCAGGCATCAAGCCGCGCTTC 952316 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | | ||| || || ||||| ||||||||||| || || || Sbjct 952317 TTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAAAAGATACCCTCGACGGCAGCGAAG 952376 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTTCATTGCCCATTT 122855 || | ||||||||| ||||||| || | ||| | | ||| | ||||| | Sbjct 952377 GCTACAAGGCGTTCAGCGAAGG-CTGACTCCTTGTCCGAGATCCAGCGAAGAGCCCAATC 952435 Query 122856 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 122905 |||||||||| ||| || || | ||| | |||||| || || | |||| Sbjct 952436 AGCCTTCTTCTTAATGCAGGGGATAGTCTCGATGGCATCGAAGAGGTGCT 952485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031897944800