Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 136 1e-26 seq3 120 9e-22 seq7 105 2e-17 seq9 102 2e-16 >seq1 Length=4437623 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || || | | |||||||| |||||||||||||| || || || || | Sbjct 1911342 TTTGCATACCGCCGCGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 1911283 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || | || || ||||| ||||| || || || || ||||| || |||||||| | Sbjct 1911282 AATCGGAAAGAGTACGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGT 1911223 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || || || || || || || || ||||| || | || || | Sbjct 1911222 CCGGCGGGATACCCTCCTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAG 1911163 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| || || || || || ||||| |||||||| Sbjct 1911162 ACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1911108 Score = 132 bits (146), Expect = 1e-25 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || ||||||| || ||||| || || ||||| || || || || || || || || |||| Sbjct 1911546 GACCAAGATGCAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTT 1911487 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 |||| || || ||||||||||| ||||| || || || || || || || || || || | Sbjct 1911486 CAAGCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTT 1911427 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 | || || || || ||||| ||||| | ||||| | ||||| || || || | |||| Sbjct 1911426 GGATCTTCGCCTTGACATTGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCT 1911367 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||| | ||| || || || || ||||| Sbjct 1911366 TTCCGGTCAATGTCTTGACGAAGATTTGCAT 1911336 Score = 129 bits (142), Expect = 2e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | ||||| || ||||| || || || || || || Sbjct 1911846 CATACCACCACGCAGACGGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTC 1911787 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || ||||| |||||||| |||||||| | |||||||| || || Sbjct 1911786 GGACAGAGTGCGACCGTCCTCAAGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGG 1911727 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || ||||| |||||||| || || || || || || || |||| || || | || Sbjct 1911726 CGGGATGCCTTCCTTATCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGAGGACTC 1911667 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || | ||||| || || | || || || || |||||||| Sbjct 1911666 GACTTCCAGAGTGATAGTCTTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 1911616 >seq3 Length=2042872 Score = 120 bits (132), Expect = 9e-22 Identities = 244/362 (67%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || ||||| | ||||| || | || |||||||| | ||||| |||||| | Sbjct 1198341 CCCGAGGAGATTTCCGCTATGGTCTTGGGCAAGATGAAGGAGACCGCTGAGGCATATCTC 1198282 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | || || |||| ||| | ||||| || ||||| || || || || |||||| Sbjct 1198281 GGCCGCTCCGTTTCTCATGCGGTTGTCACTGTTCCCGCCTACTTCAACGACGCGCAGCGT 1198222 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || |||| ||| || || | | || || | || ||||| || Sbjct 1198221 CAGGCGACCAAGGACGCGGGCACCATCGCTGGCCTCCAGGTCCTCCGTATCATTAACGAG 1198162 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||||||||| || ||||| || || ||||| || | | ||| | || | || Sbjct 1198161 CCCACTGCTGCTGCCATTGCCTACGGTCTTGACAAGAAGGGTGGC---GAGTCTCAGATC 1198105 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | | | || | |||||||| || || ||||| || || || | |||| || || Sbjct 1198104 ATCGTCTACGACCTTGGTGGTGGAACCTTCGATGTCTCCCTCCTCTCTATTGATGACGGT 1198045 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || || || ||||||||||| || ||||| ||||| || || || || || Sbjct 1198044 GTCTTCGAGGTCTTGGCGACTGCTGGTGACACTCATCTCGGTGGTGAGGACTTCGACAAC 1197985 Query 349892 CG 349893 || Sbjct 1197984 CG 1197983 >seq7 Length=3674663 Score = 105 bits (116), Expect = 2e-17 Identities = 226/338 (67%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| || || ||| | || | |||| || || || || ||| | || Sbjct 2539553 AAGATGAAGGAGATCGCCGAATCGTACCTCGGTGGTACCGTCACGTCCGCCGTTGTCACC 2539612 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || |||||||| ||||| || || || || | ||| | Sbjct 2539613 GTGCCGGCCTACTTCAACGACTCCCAGCGTCAAGCAACCAAGGACGCAGGTACCATCTCC 2539672 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || | || || || || ||||| || || || || || ||||| || Sbjct 2539673 GGCCTCAACGTCCTTCGTATCATCAACGAGCCCACGGCGGCTGCCATCGCTTATGGCCTC 2539732 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | || | || || | || || || ||| | || || || || || Sbjct 2539733 GACAAGAAGACCCAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGCGGAGGAACCTTC 2539792 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || || | || ||||| || || || || || || ||||||||||| Sbjct 2539793 GATGTGTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGGCTACTGCTGGTGAC 2539852 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || || |||||||| || || || || || || ||||| Sbjct 2539853 ACTCACCTTGGTGGTGAGGACTTCGACAACCGCCTCGT 2539890 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/185 (72%), Gaps = 1/185 (1%) Strand=Plus/Plus Query 349232 TGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGA 349291 || || | ||| ||||| ||||||||||| || || || || || || || |||||| | Sbjct 2539168 TGCGTCGGTGTCTGGCAGAATGATCGTGTTGAGATCATCGCCAACGACCAGGGTAACCGC 2539227 Query 349292 ACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAAA 349351 || ||||| || |||||||| || ||||| || ||||| |||| || ||| | || || Sbjct 2539228 ACGACGCCCTCCTACGTTGCTTTCACCGACACCGAGCGGTTGATCGGCGATGCGGCCAAG 2539287 Query 349352 AATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGTAG- 349410 || || | || || || | || || || || ||||| ||||| || || ||| | Sbjct 2539288 AACCAGGTCGCGATGAACCCCCACAACACCGTCTTCGATGCGAAGCGTCTCATCGGTCGC 2539347 Query 349411 AAGTT 349415 ||||| Sbjct 2539348 AAGTT 2539352 >seq9 Length=3088601 Score = 102 bits (112), Expect = 2e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| || || || ||| || || || || || || || | || || || || | Sbjct 2856548 GACCAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCT 2856607 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 | | || || ||||||||||| ||||| || ||||| || ||||| || || || |||| Sbjct 2856608 CCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCT 2856667 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 |||| || || || ||||| || || | || || | || || || || || | |||| Sbjct 2856668 GAATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCT 2856727 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| | || || ||||| |||||||| Sbjct 2856728 TGCCGGTCAAGGTCTTCACAAAGATCTGCAT 2856758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254147615439