Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 158 1e-33 seq8 125 8e-24 >seq6 Length=3889359 Score = 158 bits (174), Expect = 1e-33 Identities = 343/508 (68%), Gaps = 8/508 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGC-- 59670 || |||||| ||| ||||| || ||||| || || ||| | || ||| |||| | Sbjct 952762 TCCTTCTGGACCGCTGAGGAAATGGACCTGTCCAAGGATCTGCATGACTGGAACAACCGC 952703 Query 59671 -TCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 |||| |||| || | || |||||| | || ||||| |||||||| || || Sbjct 952702 CTCAACAACGATGAACGCCACTTCATCTCGCACGTTCTGGCGTTCTTCGCCGCCTCCGAC 952643 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || || | || || | | | || ||||| || |||||| |||||||| Sbjct 952642 GGTATCGTCAACGAGAACCTGGTAGAGCGTTTCTCCAACGAGGTCCAGGCGGCCGAGGCG 952583 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | ||||||| | ||| | | ||| || ||||| ||||||||||||||| Sbjct 952582 CGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATTCACTCTGAGACGTACTCGCTC 952523 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAG 59909 | ||||| | || ||||||| || | | || | || ||| |||||| ||| Sbjct 952522 CTCATCGACACGTATATCAAGGACCCCGCACAGCGCGAGCACCTCTTCGATGCCATCGAG 952463 Query 59910 ACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGA--GTCCTGGA 59966 || ||||| ||| |||| | || || || ||||| | | ||||| | | ||| Sbjct 952462 ACTATCCCCTGCA-TTAAGAAGAAGGCTGATTGGGCTCTTCGCTGGATCTCGGACAAGGA 952404 Query 59967 G-CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 | || | || || |||| || |||| || || ||| || || ||||| |||||||| Sbjct 952403 GTCAGCCTTCGCTGAACGCCTTGTAGCCTTCGCTGCCGTCGAGGGTATCTTTTTCTCTGG 952344 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 ||| ||| | || ||||||||||| ||||| ||| | ||||| ||||| | ||||| Sbjct 952343 CTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGCCTCACCTTCTC 952284 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGC 60113 |||||||| || ||||| || |||||| Sbjct 952283 TAACGAGCTCATCTCCCGCGATGAGGGC 952256 Score = 143 bits (158), Expect = 3e-29 Identities = 341/509 (67%), Gaps = 10/509 (2%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGG--GAC-AAG 59669 || |||||| ||||||| ||||| |||||| || ||||| | ||| ||| ||| ||| Sbjct 954288 TCCTTCTGGACCGTCGAAGAGATCGACCTCTCCTACGACCTCATGGACTGGACGACCAAG 954347 Query 59670 CTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGAT 59729 |||| | |||||||||| ||| || ||||| ||||||||||| || || Sbjct 954348 CTCACCCCCAACGAGCAGCACTTCGTCTCCTACGTCCTCGCCTTCTTCGCCGCCTCGGAC 954407 Query 59730 GGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCC 59789 || || || | || || | | | | || ||||| || || ||| |||||||| Sbjct 954408 GGGATCGTCAACGAGAACCTCGTCGAGCGGTTCTCCAACGAAGTGCAGGCCGCCGAGGCG 954467 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | ||||||| | ||| | | |||| | ||||| ||||||||||||||| Sbjct 954468 CGCTGCTTCTACGGCTTCCAGATCATGATCGAGAACGTGCACTCGGAGACGTACTCGCTC 954527 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAG 59909 | ||||| | || ||| || || | || || |||||| || || | Sbjct 954528 CTCATCGACACGTACGTCCGCGACCCCGCGCAGCGCGCGTTCCTGTTCGACGCGATCAAC 954587 Query 59910 ACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTG 59964 || ||||| || || | || || || |||||| ||| ||||| || || | Sbjct 954588 ACCATCCCCTGC-GTCGCGCGCAAGGCCGACTGGGCCCTGCGCTGGATCGCCGACTCGCG 954646 Query 59965 GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTG 60024 | || || ||| | || ||| | || || || ||| || || |||||||||| | Sbjct 954647 CTCCGTC-TTCGCAGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCG 954705 Query 60025 GCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCT 60084 | || ||| || || ||||||||||| ||||| ||| | ||||| || || | |||| Sbjct 954706 GGTCCTTCGCCGCGATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCTGGTCTCACGTTCT 954765 Query 60085 CCAACGAGCTGATTTCCCGGGACGAGGGC 60113 |||||||||| || ||||| || |||||| Sbjct 954766 CCAACGAGCTCATCTCCCGCGATGAGGGC 954794 >seq8 Length=3112363 Score = 125 bits (138), Expect = 8e-24 Identities = 411/629 (65%), Gaps = 36/629 (6%) Strand=Plus/Minus Query 78547 GTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATG 78606 || || || ||||| ||||||||| |||| || || || || || ||||||||| Sbjct 1725238 GTATATGGTTCGAAGCACTCGTTGTTACCCAGAATTTGACTAGTGGACGCAGTCGGCATG 1725179 Query 78607 GGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATC-----TCGACCTTTAGGC 78661 || || | || || || |||| ||||| || |||| | ||| |||| |||| Sbjct 1725178 GGGGCAAGAAGAAGGGAGTTCCTGAGACCGTG----TTGAGCAACCTTCG-CCTTCAGGC 1725124 Query 78662 -CG-----TCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 || ||||| || || | | | | ||||||| ||| ||||| | |||| Sbjct 1725123 TCGCCCAATCCCACAAGTCGGTGGGGGTCACGCCCCACAGGTCAAACTGAAGCTTGCCCT 1725064 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT- 78774 |||| || || ||||| | | |||||||||| || | || || | || || Sbjct 1725063 CGGAAGCAGGACTCCCCTGGTATGTCTCGTAAGGCCCATAGATCTGTGCCATCTCACAGC 1725004 Query 78775 --GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCG 78832 | ||||| | || || ||||| | | ||||||||| | |||||| | ||| | Sbjct 1725003 TGGCCTCGACC---GCTGCATGGTAGATCGTCTCGAAGATCTGCAAGTTGAGTTTGCGAG 1724947 Query 78833 CCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892 ||| | |||||| | | || ||| |||||| ||||||| || ||||| || | Sbjct 1724946 CCTCAACCGAGTCGAAGGGCATGCGAAGCGCCATGAACGCATCGGCAAGACCCTGAACAC 1724887 Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGG---TCGGGTAAA 78949 ||| | |||| || || || ||||||||| ||| ||||| | | || || Sbjct 1724886 CGACACCGATGGGACGATGACGCATGTTGGAG---CGGTGAGCCTCAGGAATAGGATAGT 1724830 Query 78950 AGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATT 79009 |||| || |||| ||||| ||||| || ||| ||| || || |||| ||||| Sbjct 1724829 AGTTGACGTCAATGATACGGTTAAGGTTGAACGCGACCACCTTCGTAACATCGTGCAATT 1724770 Query 79010 TGGCGAAATCAAAATGATTTCCTTT---GATGAAAGTCGGTAG-GCACAGCGATGCCAGG 79065 | ||| | | | | || || |||||| | ||| || ||| | || || ||| Sbjct 1724769 TCTGGAAGTTGTACT---TCCCGTTCTCGATGAACGACGGGAGCGCA-ATAGAGGCAAGG 1724714 Query 79066 TTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGAC 79125 ||||| || ||||||||||| ||| || ||| | || || |||||||| || || Sbjct 1724713 TTGCAAACAGCCGTCTCGTCGGGGGACGAGTACTCCACAATCTCCGTGCACAAGTTCGAA 1724654 Query 79126 GACTTGATGGTGCCGATGTTCTTCTGGTT 79154 ||||||||||| || | ||| | ||||| Sbjct 1724653 GACTTGATGGTCCCCAAGTTTTGTTGGTT 1724625 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 79387 AAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 |||||||| || | ||| ||||| ||| | ||||||| || | ||| || | || Sbjct 1724289 AAGAGGTCGGGTACCCAAAGGGCATAGAACAAGTCGCGGGCGCGAACCTCTTCCTTCCCG 1724230 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||||| || || || || || || | || ||||||||||| ||||| |||||||| Sbjct 1724229 TGGTTCTTGCGAAGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCAAGATAGATA 1724170 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || |||| ||| |||||| ||||||||| | ||||| ||||| ||| || | | Sbjct 1724169 GCAAACGCGCCCGGACGCTTGTTGCCGCCCTGATCAACGTAACGGGCAGTGGCGTCGTAC 1724110 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCC 79610 || |||||||| || ||||| |||| | | |||||||| || Sbjct 1724109 ACACGGAGCATAGGAACGATTCCGTTCGAGTATCCGTTCGTGCC 1724066 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 78171 GGCCCGAGCCTTGGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCA 78230 |||| |||| || |||||| || | |||||||||||||||||||| ||||||||||| Sbjct 1725666 GGCCTGAGCGGCGGGGCGTGTGCGTAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCA 1725607 Query 78231 TCCGTACAGGTGCATACTCGACAGCTTGGCCAGAC-TCGGGTTCTCCATGAAGATGTTGA 78289 || || | |||||| |||| || | ||||| | | ||| | | | || ||| | Sbjct 1725606 CCCATAGAAGTGCATGCTCGTCAAC-TGGCCGTTCGTGGGGGATTGGAGGTGGACGTTAA 1725548 Query 78290 GCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTT 78349 | ||||| |||||| |||| | || || || || || || | ||| | |||| ||| | Sbjct 1725547 GTGACTGCGACTGGCAGATGAAAGCGCCTCGATCCGCGGCAAGGTCAAGGACCTTCTTCT 1725488 Query 78350 GCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATG 78399 ||| |||||||||| |||| ||| || ||||| | || || ||||| Sbjct 1725487 GCGAGATCTCCCAGACGGTCTTGTAGATCGCCTTGACGTCGTCGGGGATG 1725438 Score = 105 bits (116), Expect = 7e-18 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 19102 GCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGT 19161 ||| ||| | || ||||||| || || ||||| || ||||| ||| | || | Sbjct 1723725 GCCACAGCATCTACTCATGCGTGTAGCTGTCGGTATTCATGGATCCGATATTGACCGCGC 1723784 Query 19162 CCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 | ||||||||| |||| ||| | || | |||||| |||||| |||| || || || Sbjct 1723785 CTTGGAGACATACAACCTCATGTCCGAGCGCTACTTCACCCACGCGTCGCCTACTCTCTT 1723844 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGC---TGTTTCCTAGTGGCTATGAAGGA 19278 ||||||||| || |||||||| | ||| || ||||||||| | ||||| || Sbjct 1723845 CAACGCCGGGACTCCGAACCCGCAACT---CAGCTCATGCTTCCTAGTGTCCATGAAAGA 1723901 Query 19279 TGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCG 19321 ||| ||| || ||||||||| |||||| ||||| |||||| Sbjct 1723902 TGATTCCATCGAAGGCATCTACTCGACGCTGAAGGACTGCGCG 1723944 Score = 104 bits (114), Expect = 3e-17 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 |||||| ||||| |||||| ||||||||| ||||| || || || ||||| | || || Sbjct 1723944 CGCGCAGTCCTTCAGCGTCGAGTAGATGCCTTCGATGGAATCATCTTTCATGGACACTAG 1723885 Query 79743 GAAGCA---GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 |||||| ||| | || ||||| || |||||||||||||| || |||| ||| Sbjct 1723884 GAAGCATGAGCTG---AGTTGCGGGTTCGGAGTCCCGGCGTTGAAGAGAGTAGGCGACGC 1723828 Query 79800 GTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTC 79859 ||| |||||| | | | ||| || | ||| |||||| | |||| | ||| Sbjct 1723827 GTGGGTGAAGTAGCGCTCGGACATGAGGTTGTATGTCTCCAAGGCGCGGTCAATATCGGA 1723768 Query 79860 GCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGAC 79913 || || || ||||| || || ||||||| || | ||| ||| |||| |||| Sbjct 1723767 TCCATGAATACCGACAGCTACACGCATGAGTAGATGCTGTGGCCGCTCGGCGAC 1723714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524710864720