Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 156 5e-33 seq1 111 2e-19 seq8 104 3e-17 seq4 89.7 6e-13 >seq6 Length=3889359 Score = 156 bits (172), Expect = 5e-33 Identities = 320/470 (68%), Gaps = 12/470 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||||||||| | || |||||||| | ||| ||||||| ||| || ||| ||| Sbjct 952293 AGGCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCAGAGAAA 952352 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC---GGAA 74921 ||||| || ||||| || ||||| |||||||||| ||||| | || || | Sbjct 952353 AAGATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAAGGCTGACTCCTTGTCC 952412 Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGC 74980 | ||||| ||||||| ||||| || | | | | |||||| | ||| ||||| || Sbjct 952413 GAGATCCAGCGAAGAGCCCAATCAGCCTT-CTTCTTAATGCAGGGGATAGTCTCGATGGC 952471 Query 74981 TTGGAAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAG 75038 | ||||||| || || || | |||| ||||||| | |||| || | || ||| Sbjct 952472 ATCGAAGAGGTGCTCGCG--CTGTGCGGGGTCCTTGATATACGTGTCGATGAGGAGCGAG 952529 Query 75039 TACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCT 75098 |||||||| || ||||| ||| | | |||| | ||||||| | |||||||| Sbjct 952530 TACGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCG 952589 Query 75099 GCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAG 75158 || ||| || || || || ||| | | | ||||| ||||||| ||||| ||| Sbjct 952590 GCCGCCTGGACCTCGTTGGAGAAACGCTCTACCAGGTTCTCGTTGACGATACCGTCGGAG 952649 Query 75159 GCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTG 75215 |||||||| || ||||| || ||| |||||||| ||||||| ||| | ||| Sbjct 952650 GCGGCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCATCGTTGTTGAGGCGGTTG 952709 Query 75216 TCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | ||| || | ||| ||| | || || || ||||| | |||||||| Sbjct 952710 TTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGGTCCAGAA 952759 Score = 129 bits (142), Expect = 6e-25 Identities = 323/484 (67%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || |||| || |||||||| | || |||||||| | ||| ||||| || | Sbjct 954772 TCGTTGGAGAACGTGAGACCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATCGCGGCG 954713 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || |||||||| ||| ||||| || || ||||| ||||| | ||||| Sbjct 954712 AAGGACCCGGAGAAGAAGACGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCTGCGAA- 954654 Query 74910 GGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 | | | || |||| ||||| | | ||||| || || || || ||| ||||| Sbjct 954653 GACGGAGCGCGAGTCGGCGATCCAGCGCAGGGCCCAGTCGGCCTTGCGCGCGAC-GCAGG 954595 Query 74966 G-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGT 75024 | | || | |||||| | ||| ||| || || |||| || |||| | ||| Sbjct 954594 GGATGGTGTTGATCGCGTCGAACAGGAACGCGCGCTGCGCGGGGTCGCGGACGTACGTGT 954535 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGA 75084 | || | || |||||||||||||| || | |||| | | |||| | |||||| Sbjct 954534 CGATGAGGAGCGAGTACGTCTCCGAGTGCACGTTCTCGATCATGATCTGGAAGCCGTAGA 954475 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144 | | |||||||| || ||| || || || || || | | ||| ||||| ||| Sbjct 954474 AGCAGCGCGCCTCGGCGGCCTGCACTTCGTTGGAGAACCGCTCGACGAGGTTCTCGTTGA 954415 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 |||| ||||||||||||||||| || || || || || ||||| |||| | | Sbjct 954414 CGATCCCGTCCGAGGCGGCGAAGAAGGCGAGGACGTAGGAGACGAAGTGCTGCTCGTTGG 954355 Query 75205 CAGTGAG-TTTGTC--CCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCC 75261 ||||| || ||| ||| ||| | ||||| | | || ||||| ||||| |||| Sbjct 954354 GGGTGAGCTTGGTCGTCCAGTCCATGAGGTCGTAGGAGAGGTCGATCTCTTCGACGGTCC 954295 Query 75262 AGAA 75265 |||| Sbjct 954294 AGAA 954291 >seq1 Length=4437623 Score = 111 bits (122), Expect = 2e-19 Identities = 234/349 (67%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || |||||||||||||| || || | ||||| |||||| | || || | ||| || Sbjct 522625 CCGGTGCCGATACCCTCTGCGCCGTTGACCAGAACCATCGGGATGATGGGCATGTACCAC 522566 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| || | |||||| ||| |||| | || || || | ||| ||| Sbjct 522565 TCCGGCTCGACAGACTTACCGTCATCCTGCTGGTACGTCAGGACGGCGTCGTCTGCCGGG 522506 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | || | | || | ||| |||||||||||||||| ||| | Sbjct 522505 TGCATCAAGTGGCGGATGGCAGGCGATAGCTCGGTGAAAATGTAACGAGCCGCGGCATGA 522446 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 || |||||||| ||||||||||||||| ||| ||||| | | ||| |||||| Sbjct 522445 TCTTTGCCACCTTGGTCACGCGTACCGAATTGACCATTCGGCATGAGCAAGTTTAGGTTG 522386 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 || || ||||||| ||||||| ||||| || || | | |||||| || || Sbjct 522385 TTACTCCCGACAAAGTCCTGAGCCAGGTTGATGATTGTCGCCATCAAGCTCGCTTCGCCG 522326 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCT 117500 ||||| ||||||| ||| | ||||| ||| |||| || || |||| Sbjct 522325 TGGTGGTACGCCGAAATCTCTGAGACGTAACCCACCAGTTGCGCGACCT 522277 >seq8 Length=3112363 Score = 104 bits (114), Expect = 3e-17 Identities = 172/243 (71%), Gaps = 9/243 (4%) Strand=Plus/Plus Query 55694 GGGTCCGTCCAGAATCTGGAGAT--TCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTG 55750 || || |||||||| | || || ||| | || | |||||| ||| ||| ||| || Sbjct 1725415 GGTTCTGTCCAGAACATCGACATCATCCCCGACGACGTCAAGGCGATCTACAAGACCGTC 1725474 Query 55751 TGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGAC 55810 |||||||| | ||||||| | ||||| | || ||||| || || | |||| | Sbjct 1725475 TGGGAGATCTCGCAGAAGAAGGTCCTTGACCTTGCCGCGGATCGAGGCGCTTTCATCTGC 1725534 Query 55811 CAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACT---GGCCAAGTTGAGCTCG 55867 ||||| ||||| || ||| || | | | |||| ||| ||||| ||||| Sbjct 1725535 CAGTCGCAGTCACTTAACGTCCACCTCCA--ATCCCCCACGAACGGCCA-GTTGACGAGC 1725591 Query 55868 ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCGC 55927 |||||||| || |||||||||||||| ||||||||||| |||||||| || || || ||| Sbjct 1725592 ATGCACTTCTATGGGTGGAAGAAGGGCCTCAAGACGGGCATGTACTACCTACGCACACGC 1725651 Query 55928 GCC 55930 || Sbjct 1725652 CCC 1725654 Score = 102 bits (112), Expect = 9e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || |||||||| | | | |||||||| ||||||||||| || | | || ||| ||| Sbjct 1724066 GGCACGAACGGATACTCGAACGGAATCGTTCCTATGCTCCGTGTGTACGACGCCACTGCC 1724125 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || ||||| | ||||| || ||||| ||| |||| || ||||| || ||||| Sbjct 1724126 CGTTACGTTGATCAGGGCGGCAACAAGCGTCCGGGCGCGTTTGCTATCTATCTTGAGCCT 1724185 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||||||||| | | ||||| || || || || ||| || || | |||||| | Sbjct 1724186 TGGCACGCCGATGTCTTCGAGTTCCTTGACCTTCGCAAGAACCACGGGAAGGAAGAGGTT 1724245 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTT 53694 ||| ||| ||| |||| || || ||| | || |||||||| Sbjct 1724246 CGCGCCCGCGACTTGTTCTATGCCCTTTGGGTACCCGACCTCTT 1724289 >seq4 Length=1949064 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 158945 ACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTT 159004 ||||||| | | ||||||||| || ||||| | |||||||||||| || || ||| | Sbjct 1499417 ACTCGCGCACGGGGTGCGTCTCGCCCGTCGCGAGCACAAAGTCCTCCGGGGCGTCCTGCT 1499358 Query 159005 GGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGC 159041 | ||||||||||||||| |||||||||| || |||| Sbjct 1499357 GTAGCATGAGCCACATGCCCTCGACGTAGTCGCGCGC 1499321 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 124674 ATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCA 124733 |||||||| || || || | || || ||| |||||||||||||| || ||||| Sbjct 1499128 ATCTTGCGGGTGACGAAGGTGCGGCCACGGCGCGGGGACTCGTGGTTGAAGAGGATGCCG 1499069 Query 124734 GTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGC 124793 | ||||| |||| ||||||| |||||||||||| ||| ||||| |||| |||| Sbjct 1499068 TTGCACGCGTACATGCCGTACGCCTCGCGGTAGTTGACCGTGATCCAGAACCCGTAGAGT 1499009 Query 124794 TTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 || | ||||| || || || |||||||| || || Sbjct 1499008 TTCGCGACGCCGTACGGTGAGCGCGGGTAGAACGGCGT 1498971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215911077400