Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03]
13 sequences; 37,433,966 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq9 178 1e-39
seq1 158 1e-33
seq8 113 5e-20
seq12 98.7 1e-15
>seq9
Length=3088601
Score = 178 bits (196), Expect = 1e-39
Identities = 176/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || ||||| |||||||| ||||| || |||
Sbjct 2856477 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTGGAGGTCGAATCATCG 2856418
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || |||||||||||||| || |||||||| ||||||
Sbjct 2856417 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAG 2856358
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || ||||| || ||||| ||||| || | |||||| || | ||||| ||
Sbjct 2856357 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTCTCGGACTACAAC 2856298
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| ||||| || ||||| || || ||| | ||||| || ||||||
Sbjct 2856297 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTCCGTCTGCGTGGTGGA 2856250
Score = 163 bits (180), Expect = 3e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||||||||| || ||||| ||||| || || || |||||||||||
Sbjct 2856250 AATGCAGATCTTTGTCAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTTGAGTCGTC 2856191
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | || | || ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 2856190 GGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCGCCCGACCA 2856131
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || ||||| || || ||||| |||||||||| ||| || || | || || ||
Sbjct 2856130 GCAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCGGATTACAA 2856071
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||| || || || || | |||||||| || ||
Sbjct 2856070 CATCCAGAAGGAGAGCACCCTGCACCTTGTGCTTCGTCTTCGTGGCGG 2856023
Score = 147 bits (162), Expect = 2e-30
Identities = 147/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| | ||||||||||| || || || ||||| |||||
Sbjct 2856758 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCC 2856699
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || ||||||||||||||||| ||||| || || ||
Sbjct 2856698 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 2856639
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| | ||||| | ||| ||||| | ||||| ||
Sbjct 2856638 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAAC 2856579
Query 27586 GTCCAAAAGGA 27596
|||| |||||
Sbjct 2856578 ATCCAGAAGGA 2856568
Score = 93.3 bits (102), Expect = 5e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| |||||||||||||| || || |||||||| |||||
Sbjct 2857093 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 2857034
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|||| ||||| || | ||||| || || ||||||||||||||
Sbjct 2857033 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 2856990
>seq1
Length=4437623
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| || || |||||||| || || || |||||||||||
Sbjct 1911108 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCTTCG 1911167
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||||| || || || ||||||||||| || || || ||||||
Sbjct 1911168 GACACCATCGATAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCGGACCAG 1911227
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || || || || || || ||||| || ||||||| ||||| || | || || ||
Sbjct 1911228 CAACGCCTCATCTTCGCGGGCAAGCAGCTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1911287
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || |||||||| || || ||||||| ||||| ||
Sbjct 1911288 ATCCAGAAGGAGTCTACTCTTCACCTTGTTCTGCGTCTCCGCGGCGG 1911334
Score = 147 bits (162), Expect = 2e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | ||||| ||||| || || || ||||||||||| |
Sbjct 1911336 ATGCAAATCTTCGTCAAGACATTGACCGGAAAGACGATCACGCTCGAGGTTGAGTCCTCT 1911395
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||||| || || || ||||||||||| || || || |||||
Sbjct 1911396 GACACTATTGACAATGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCGCCGGACCAA 1911455
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| || || || | ||| || | | ||||| ||
Sbjct 1911456 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGACGGTCGGACGTTGTCGGACTACAAC 1911515
Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611
| || |||||||| || || |||||
Sbjct 1911516 ATTCAGAAGGAATCTACCCTGCATCT 1911541
Score = 138 bits (152), Expect = 1e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || |||||||| ||||| || || || || | ||||| |||||
Sbjct 1911844 ATGCAGATCTTCGTTAAGACGCTCACCGGGAAAACAATCACATTGGAGGTCGAGTCTTCC 1911903
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| ||||||| || || |||||||||||||| ||||| || ||||||
Sbjct 1911904 GATACGATCGACAATGTGAAGGCGAAGATACAGGACAAGGAGGGCATTCCCCCGGACCAG 1911963
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| ||||| | ||||| | ||||| || | ||||| ||
Sbjct 1911964 CAGCGCCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGTACGCTGTCTGACTACAAC 1912023
Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611
|||| ||||| |||||| || ||
Sbjct 1912024 ATCCAGAAGGAGAGCACTCTGCACCT 1912049
Score = 131 bits (144), Expect = 2e-25
Identities = 244/353 (69%), Gaps = 8/353 (2%)
Strand=Plus/Plus
Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113
|||| ||||| ||| ||| ||||| ||||| |||| || ||||||||||| |||
Sbjct 522277 AGGTCGCGCAACTGGTGGGTTACGTCTCAGAGATTTCGGCGTACCACCACGGCGAAGCG- 522335
Query 32114 CGCTCCAGGGC-ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAAC 32172
||| | ||| || || ||||||| |||||| |||||||||| || ||||| |||
Sbjct 522336 AGCTTGATGGCGACAATCATCAACCTGGCTCAGGACTTTGTCGGGAGTAACAACCTAAAC 522395
Query 32173 TTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG---ATGCTGCG 32229
|| ||| ||| ||| || || || || || | |||||||| | |||| |||
Sbjct 522396 TTGCTCATGCCGAATGGTCAATTCGGTACGCGTGACCAAGGTGGCAAAGATCATGCCGCG 522455
Query 32230 AGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCG 32289
||| |||||||| |||||| || | ||| | | ||| | | | ||||| |
Sbjct 522456 -GCT--CGTTACATTTTCACCGAGCTATCGCCTGCCATCCGCCACTTGATGCACCCGGCA 522512
Query 32290 GACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTAC 32349
||||| || || || | |||| | ||||||||| || |||||||||| || |||
Sbjct 522513 GACGACGCCGTCCTGACGTACCAGCAGGATGACGGTAAGTCTGTCGAGCCGGAGTGGTAC 522572
Query 32350 AGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402
| || | | |||||| | |||| ||||| ||||| || ||||| || ||
Sbjct 522573 ATGCCCATCATCCCGATGGTTCTGGTCAACGGCGCAGAGGGTATCGGCACCGG 522625
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | || ||||||||||| ||||| || || |||||
Sbjct 1911616 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACTATCACTCTGGAAGTCGAGTCCTCA 1911675
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||||| || || ||||| ||||| || || || || ||||||
Sbjct 1911676 GACACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCGCCCGACCAG 1911735
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | || ||||| || || || || ||||| | ||| || || | ||||| ||
Sbjct 1911736 CAACGGTTGATCTTTGCGGGAAAACAGCTTGAGGACGGTCGCACTCTGTCCGACTACAAC 1911795
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || ||||| | || | ||||| || |||||
Sbjct 1911796 ATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 1911842
Score = 93.3 bits (102), Expect = 5e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568
|||| ||||| ||||||||||| || || || || || ||||| |||||||||| || |
Sbjct 1910983 GAATCCCTCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGGA 1911042
Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628
|||| | ||||| || |||| |||||||| || || || || ||| | ||||| || |
Sbjct 1911043 CCCTGTCGGACTACAACATCCAGAAGGAATCTACGCTGCACCTCGTCCTCCGTCTCCGTG 1911102
Query 27629 GTGG 27632
| ||
Sbjct 1911103 GCGG 1911106
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || |||||||| || ||||| ||||| |||||
Sbjct 1910824 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCCTCG 1910883
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||| | || | |||||||| || ||||||||||||||
Sbjct 1910884 GACACCATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAGGG 1910927
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| ||||| || ||||| || || |||||||| |||||
Sbjct 3825163 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCTTCC 3825104
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | || | ||| | ||||| || |||||||||||||||||
Sbjct 3825103 GACACTATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGG 3825060
>seq8
Length=3112363
Score = 113 bits (124), Expect = 5e-20
Identities = 220/324 (68%), Gaps = 6/324 (2%)
Strand=Plus/Minus
Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753
|||||| | || || | | ||||||| | || || || |||||||| |||| ||||
Sbjct 1724936 GTCGAAGGGCATGCGAAGCGCCATGAACGCATCGGCAAGACCCTGAACACCGACACCGAT 1724877
Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813
|| || || ||| |||| || || | ||||| ||||| || || |||| || ||
Sbjct 1724876 GGGACGATGACGCATGTTGGAGCGGTGAGCCTCAGGAATAGGATAGTAGTTGACGTCAAT 1724817
Query 80814 GACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA 80873
|| ||||| |||||| | || ||| |||||||| || | |||||| |||| | |
Sbjct 1724816 GATACGGTTAAGGTTGAACGCGACCACCTTCGTAACATCGTGCAATTTCTGGAAGTTGTA 1724757
Query 80874 TTGGTTCCCCTTCACAA---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCAC 80930
| |||| ||| | | | | ||| || | || || || ||||| || |||
Sbjct 1724756 CT---TCCCGTTCTCGATGAACGACGGGAGCGCAATAGAGGCAAGGTTGCAAACAGCCGT 1724700
Query 80931 CTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACC 80990
||| || | | |||| || || ||||||||||| || |||||||| || || ||
Sbjct 1724699 CTCGTCGGGGGACGAGTACTCCACAATCTCCGTGCACAAGTTCGAAGACTTGATGGTCCC 1724640
Query 80991 CAGGTTTTTCTGGTTTGACTTGGC 81014
|| ||||| ||||| ||||| ||
Sbjct 1724639 CAAGTTTTGTTGGTTCGACTTCGC 1724616
>seq12
Length=2614590
Score = 98.7 bits (108), Expect = 1e-15
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570
||||| || ||||||||||| || ||||| || || ||||| |||||||||| ||||||
Sbjct 1420305 ATTCCCCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACC 1420364
Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629
|| ||| ||||| || |||| ||||| ||||| || || || || | || ||||| ||
Sbjct 1420365 CTCAGC-GACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGG 1420423
Query 27630 TGG 27632
|||
Sbjct 1420424 TGG 1420426
Score = 89.7 bits (98), Expect = 6e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 27396 TATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455
|||| || |||||| || || |||||||| || || ||||||||||| || || |||||
Sbjct 1420136 TATTTGTAGAATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGT 1420195
Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|||||| || | ||||| ||| | ||||| || || || |||||||||||
Sbjct 1420196 TGAGTCCTCGGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG 1420249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310307324560
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