Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9 178 1e-39 seq1 158 1e-33 seq8 113 5e-20 seq12 98.7 1e-15 >seq9 Length=3088601 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| |||||||| ||||| || ||| Sbjct 2856477 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTGGAGGTCGAATCATCG 2856418 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || |||||||||||||| || |||||||| |||||| Sbjct 2856417 GACACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAG 2856358 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| ||||| || | |||||| || | ||||| || Sbjct 2856357 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTCTCGGACTACAAC 2856298 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || ||||| || || ||| | ||||| || |||||| Sbjct 2856297 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTCCGTCTGCGTGGTGGA 2856250 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || ||||| ||||| || || || ||||||||||| Sbjct 2856250 AATGCAGATCTTTGTCAAGACCCTGACCGGGAAGACCATCACCCTGGAGGTTGAGTCGTC 2856191 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | || ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 2856190 GGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCGCCCGACCA 2856131 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || ||||| || || ||||| |||||||||| ||| || || | || || || Sbjct 2856130 GCAGCGCCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGCTCTCGGATTACAA 2856071 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || || | |||||||| || || Sbjct 2856070 CATCCAGAAGGAGAGCACCCTGCACCTTGTGCTTCGTCTTCGTGGCGG 2856023 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | ||||||||||| || || || ||||| ||||| Sbjct 2856758 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCC 2856699 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || ||||||||||||||||| ||||| || || || Sbjct 2856698 GACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAA 2856639 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| | ||||| | ||| ||||| | ||||| || Sbjct 2856638 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAAC 2856579 Query 27586 GTCCAAAAGGA 27596 |||| ||||| Sbjct 2856578 ATCCAGAAGGA 2856568 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| |||||||||||||| || || |||||||| ||||| Sbjct 2857093 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCG 2857034 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| || | ||||| || || |||||||||||||| Sbjct 2857033 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGG 2856990 >seq1 Length=4437623 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || || || ||||||||||| Sbjct 1911108 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCTTCG 1911167 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || || ||||||||||| || || || |||||| Sbjct 1911168 GACACCATCGATAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCGGACCAG 1911227 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || || || || ||||| || ||||||| ||||| || | || || || Sbjct 1911228 CAACGCCTCATCTTCGCGGGCAAGCAGCTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1911287 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || |||||||| || || ||||||| ||||| || Sbjct 1911288 ATCCAGAAGGAGTCTACTCTTCACCTTGTTCTGCGTCTCCGCGGCGG 1911334 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||| ||||| || || || ||||||||||| | Sbjct 1911336 ATGCAAATCTTCGTCAAGACATTGACCGGAAAGACGATCACGCTCGAGGTTGAGTCCTCT 1911395 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || || || ||||||||||| || || || ||||| Sbjct 1911396 GACACTATTGACAATGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCGCCGGACCAA 1911455 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || || || | ||| || | | ||||| || Sbjct 1911456 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAAGACGGTCGGACGTTGTCGGACTACAAC 1911515 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || |||||||| || || ||||| Sbjct 1911516 ATTCAGAAGGAATCTACCCTGCATCT 1911541 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||| || || || || | ||||| ||||| Sbjct 1911844 ATGCAGATCTTCGTTAAGACGCTCACCGGGAAAACAATCACATTGGAGGTCGAGTCTTCC 1911903 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 1911904 GATACGATCGACAATGTGAAGGCGAAGATACAGGACAAGGAGGGCATTCCCCCGGACCAG 1911963 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| | ||||| | ||||| || | ||||| || Sbjct 1911964 CAGCGCCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGTACGCTGTCTGACTACAAC 1912023 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| |||||| || || Sbjct 1912024 ATCCAGAAGGAGAGCACTCTGCACCT 1912049 Score = 131 bits (144), Expect = 2e-25 Identities = 244/353 (69%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| ||||| ||| ||| ||||| ||||| |||| || ||||||||||| ||| Sbjct 522277 AGGTCGCGCAACTGGTGGGTTACGTCTCAGAGATTTCGGCGTACCACCACGGCGAAGCG- 522335 Query 32114 CGCTCCAGGGC-ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAAC 32172 ||| | ||| || || ||||||| |||||| |||||||||| || ||||| ||| Sbjct 522336 AGCTTGATGGCGACAATCATCAACCTGGCTCAGGACTTTGTCGGGAGTAACAACCTAAAC 522395 Query 32173 TTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG---ATGCTGCG 32229 || ||| ||| ||| || || || || || | |||||||| | |||| ||| Sbjct 522396 TTGCTCATGCCGAATGGTCAATTCGGTACGCGTGACCAAGGTGGCAAAGATCATGCCGCG 522455 Query 32230 AGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCG 32289 ||| |||||||| |||||| || | ||| | | ||| | | | ||||| | Sbjct 522456 -GCT--CGTTACATTTTCACCGAGCTATCGCCTGCCATCCGCCACTTGATGCACCCGGCA 522512 Query 32290 GACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTAC 32349 ||||| || || || | |||| | ||||||||| || |||||||||| || ||| Sbjct 522513 GACGACGCCGTCCTGACGTACCAGCAGGATGACGGTAAGTCTGTCGAGCCGGAGTGGTAC 522572 Query 32350 AGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | || | | |||||| | |||| ||||| ||||| || ||||| || || Sbjct 522573 ATGCCCATCATCCCGATGGTTCTGGTCAACGGCGCAGAGGGTATCGGCACCGG 522625 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || ||||||||||| ||||| || || ||||| Sbjct 1911616 ATGCAGATCTTCGTGAAGACTTTGACGGGCAAGACTATCACTCTGGAAGTCGAGTCCTCA 1911675 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || ||||| ||||| || || || || |||||| Sbjct 1911676 GACACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCGCCCGACCAG 1911735 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || ||||| || || || || ||||| | ||| || || | ||||| || Sbjct 1911736 CAACGGTTGATCTTTGCGGGAAAACAGCTTGAGGACGGTCGCACTCTGTCCGACTACAAC 1911795 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | || | ||||| || ||||| Sbjct 1911796 ATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 1911842 Score = 93.3 bits (102), Expect = 5e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 |||| ||||| ||||||||||| || || || || || ||||| |||||||||| || | Sbjct 1910983 GAATCCCTCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGGA 1911042 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 |||| | ||||| || |||| |||||||| || || || || ||| | ||||| || | Sbjct 1911043 CCCTGTCGGACTACAACATCCAGAAGGAATCTACGCTGCACCTCGTCCTCCGTCTCCGTG 1911102 Query 27629 GTGG 27632 | || Sbjct 1911103 GCGG 1911106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||||| Sbjct 1910824 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCCTCG 1910883 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | || | |||||||| || |||||||||||||| Sbjct 1910884 GACACCATCGACAACGTTAAGGCTAAGATCCAGGACAAGGAGGG 1910927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| ||||| || ||||| || || |||||||| ||||| Sbjct 3825163 ATGCAGATCTTCGTCAAGACCCTTACGGGGAAGACCATCACCCTTGAGGTGGAGTCTTCC 3825104 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| | ||||| || ||||||||||||||||| Sbjct 3825103 GACACTATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGG 3825060 >seq8 Length=3112363 Score = 113 bits (124), Expect = 5e-20 Identities = 220/324 (68%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 80694 GTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGAT 80753 |||||| | || || | | ||||||| | || || || |||||||| |||| |||| Sbjct 1724936 GTCGAAGGGCATGCGAAGCGCCATGAACGCATCGGCAAGACCCTGAACACCGACACCGAT 1724877 Query 80754 CGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGAT 80813 || || || ||| |||| || || | ||||| ||||| || || |||| || || Sbjct 1724876 GGGACGATGACGCATGTTGGAGCGGTGAGCCTCAGGAATAGGATAGTAGTTGACGTCAAT 1724817 Query 80814 GACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA 80873 || ||||| |||||| | || ||| |||||||| || | |||||| |||| | | Sbjct 1724816 GATACGGTTAAGGTTGAACGCGACCACCTTCGTAACATCGTGCAATTTCTGGAAGTTGTA 1724757 Query 80874 TTGGTTCCCCTTCACAA---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCAC 80930 | |||| ||| | | | | ||| || | || || || ||||| || ||| Sbjct 1724756 CT---TCCCGTTCTCGATGAACGACGGGAGCGCAATAGAGGCAAGGTTGCAAACAGCCGT 1724700 Query 80931 CTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACC 80990 ||| || | | |||| || || ||||||||||| || |||||||| || || || Sbjct 1724699 CTCGTCGGGGGACGAGTACTCCACAATCTCCGTGCACAAGTTCGAAGACTTGATGGTCCC 1724640 Query 80991 CAGGTTTTTCTGGTTTGACTTGGC 81014 || ||||| ||||| ||||| || Sbjct 1724639 CAAGTTTTGTTGGTTCGACTTCGC 1724616 >seq12 Length=2614590 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||| || ||||||||||| || ||||| || || ||||| |||||||||| |||||| Sbjct 1420305 ATTCCCCCCGACCAGCAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACC 1420364 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| ||||| || |||| ||||| ||||| || || || || | || ||||| || Sbjct 1420365 CTCAGC-GACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGG 1420423 Query 27630 TGG 27632 ||| Sbjct 1420424 TGG 1420426 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27396 TATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455 |||| || |||||| || || |||||||| || || ||||||||||| || || ||||| Sbjct 1420136 TATTTGTAGAATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGT 1420195 Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||||| || | ||||| ||| | ||||| || || || ||||||||||| Sbjct 1420196 TGAGTCCTCGGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG 1420249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310307324560