Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq9 91.5 1e-13 >seq1 Length=4437623 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || || |||| || || || |||| ||| Sbjct 1911824 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCA 1911765 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 |||||||| |||||||| || | || |||||||||| || | || || || ||| | Sbjct 1911764 AGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGG 1911705 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || ||| |||| ||| | | | ||| || ||||| || |||| |||||| | || Sbjct 1911704 ATCTTCGCCTTGA-CGTTGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTT 1911646 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || ||||| ||||| Sbjct 1911645 GCCCGTCAAAGTCTTCACGAAGATCTGCAT 1911616 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || || | || || || |||| || | ||| Sbjct 1912046 TGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCAACTGC 1911987 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||| | ||| | || ||| |||||| || ||| Sbjct 1911986 TTCCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTATCTTC 1911927 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | ||||||| ||||| || |||| ||||| |||| || || Sbjct 1911926 GCCTTCACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCCCGGTG 1911867 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 ||||| ||||| ||||| ||||| Sbjct 1911866 AGCGTCTTAACGAAGATCTGCAT 1911844 >seq9 Length=3088601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || ||||| | || || || | || || ||||| Sbjct 2856047 TGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGTGCGACCATCCTCGAGCTGC 2856106 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | | ||| |||||| ||| || Sbjct 2856107 TTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGAATCCCCTCCTTGTCCTGGATCTTG 2856166 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | ||| || |||||| || |||| ||||| | || || || Sbjct 2856167 GCCTTCA-CGTTGTCGATCGTGTCCGACGACTCAACCTCCAGGGTGATGGTCTTCCCGGT 2856225 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || |||||||| ||||| Sbjct 2856226 CAGGGTCTTGACAAAGATCTGCAT 2856249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || |||||||| || || || || || |||| || || || |||| || | ||| Sbjct 2856556 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCAACTGC 2856615 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| ||||||||||| || || | ||| | || ||| |||||| || || Sbjct 2856616 TTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTG 2856675 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 |||| | | | || ||| ||||| || || | |||||| | || || ||| Sbjct 2856676 GCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGCCGGTC 2856735 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 | || || |||||||| ||||| Sbjct 2856736 AAGGTCTTCACAAAGATCTGCAT 2856758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545531943869