Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq9 111 1e-19 seq1 98.7 7e-16 seq12 82.4 5e-11 >seq9 Length=3088601 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || ||||| ||||| || || || || || Sbjct 2856477 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTGGAGGTCGAATCATCG 2856418 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| |||||| | || || || || Sbjct 2856417 GACACGATCGACAATGTCAAGGCGAAGA-TTCAGGACAAGGAAGGTATTCCTCCCGACCA 2856359 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || ||||||| || ||| | || ||||| Sbjct 2856358 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTCTCGGACTACAA 2856299 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2856298 CATCCAGAAGGAGTCGAC 2856281 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| ||||| || || || | Sbjct 2856758 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCC 2856699 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || ||||| || || | || || ||||| Sbjct 2856698 GACACCATCGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGCATTCCCCCGGATCA 2856640 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || ||||| ||||| || |||| |||| ||||| | ||| ||||| Sbjct 2856639 ACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAA 2856580 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 2856579 CATCCAGAAGGAG 2856567 >seq1 Length=4437623 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||||||| || |||||||| ||||| ||||| || || Sbjct 1911108 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCTTCG 1911167 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || ||||| || ||| | ||||| || || Sbjct 1911168 GACACCATCGATAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCGGACCAG 1911227 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || || || ||||| || || || || | || ||| | |||||||||| Sbjct 1911228 CAACGCCTCATCTTCGCGGGCAAGCAGCTTGAGGATGGCCGTACTCTTTCCGATTACAAC 1911287 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1911288 ATCCAGAAGGAGTCTAC 1911304 >seq12 Length=2614590 Score = 82.4 bits (90), Expect = 5e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 23607 TAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTC 23666 || ||||||||||||||| || ||||||||||| || || ||||| ||||| ||||| || Sbjct 1420142 TAGAATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTTGAGTC 1420201 Query 23667 CACGGACACTGTTGA 23681 | ||||||| |||| Sbjct 1420202 CTCGGACACCATTGA 1420216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009546446604