Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq9 140 8e-28 >seq1 Length=4437623 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| ||||| || || || |||| |||||||||| | ||| Sbjct 1911328 CGGAGACGCAGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTA 1911269 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| || ||||| ||||| ||||| ||||| Sbjct 1911268 CGGCCATCCTCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATACCC 1911209 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||||||||||||| ||| || ||||||||||| || | || || || | Sbjct 1911208 TCCTTGTCTTGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAACCTCGAGG 1911149 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||||||||||||||| Sbjct 1911148 GTGATCGTCTTGCCCGT 1911132 Score = 150 bits (166), Expect = 4e-31 Identities = 158/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||| || || || ||||| || || | ||||| || | ||| || | || ||||| | Sbjct 1911543 CAAGATGCAGGGTAGATTCCTTCTGAATGTTGTAGTCCGACAACGTCCGACCGTCTTCAA 1911484 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| ||||| ||||| || || |||||||| ||||| ||||| ||||||||||||| Sbjct 1911483 GCTGCTTGCCAGCAAAGATGAGACGCTGTTGGTCCGGCGGGATACCCTCCTTGTCTTGGA 1911424 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| || || ||||| |||| || || || | |||||||||||| | Sbjct 1911423 TCTTCGCCTTGACATTGTCAATAGTGTCAGAGGACTCAACCTCGAGCGTGATCGTCTTTC 1911364 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | ||| | |||||| Sbjct 1911363 CGGTCAATGTCTTGACGAAGATTTGCAT 1911336 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || |||| ||||| |||| || ||| | || || Sbjct 1911827 AGAACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCC 1911768 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| | ||||| ||||||||||| || |||||||| || Sbjct 1911767 TCAAGCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCC 1911708 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| |||||||||| || || || | ||||| ||| Sbjct 1911707 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTC 1911648 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | ||| | ||||| Sbjct 1911647 TTGCCCGTCAAAGTCTTCACGAAGATCTGCAT 1911616 Score = 109 bits (120), Expect = 1e-18 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| |||||| || || |||| ||||| || | || || | || || || | Sbjct 1912051 CAAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAGCGTACGGCCGTCCTCCA 1911992 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||||||||||||||||| || || || ||||| || ||||| || |||||||| || | Sbjct 1911991 ACTGCTTCCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGTA 1911932 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||||||| ||||| || || || | || || || || ||||| || || | Sbjct 1911931 TCTTCGCCTTCACATTGTCGATCGTATCGGAAGACTCGACCTCCAATGTGATTGTTTTCC 1911872 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || | || || | ||| | ||||| Sbjct 1911871 CGGTGAGCGTCTTAACGAAGATCTGCAT 1911844 >seq9 Length=3088601 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| ||||| || || || |||| ||||| || | | ||| | || ||| Sbjct 2856266 AGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTCT 2856325 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || |||||||| ||||||||||||||||| Sbjct 2856326 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTCC 2856385 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||| ||||| || | ||| || || | || |||||| Sbjct 2856386 TGAATCTTCGCCTTGACATTGTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGTC 2856445 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | ||| | ||||| Sbjct 2856446 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 2856477 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| || ||| || || |||| |||||||| | | || Sbjct 2856028 ACGAAGACGAAGCACAAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAGAGCGT 2856087 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || ||||| || || || || |||||||||||||| || Sbjct 2856088 GCGACCATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCGGGCGGAATCCC 2856147 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| ||||| ||||| || | || || || | Sbjct 2856148 CTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGACGACTCAACCTCCAG 2856207 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| ||||| || |||| || || | || | |||||| Sbjct 2856208 GGTGATGGTCTTCCCGGTCAGGGTCTTGACAAAGATCTGCATT 2856250 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 |||||||||| ||| || || |||| ||||| |||| | || | || || || | Sbjct 2856551 CAAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCCTCCA 2856610 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||||| ||||| |||||||| || ||||| || || ||||| || |||||||| || | Sbjct 2856611 ACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTGTCCTGAA 2856670 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| ||||||||||| || | || || || | |||||| ||||||| Sbjct 2856671 TCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCGACCTCGAGCGTGATGGTCTTGC 2856730 Query 225686 CCGTCAAAGTTTT 225698 | ||||| || || Sbjct 2856731 CGGTCAAGGTCTT 2856743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531001369022