Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 105 9e-18 >seq6 Length=3889359 Score = 105 bits (116), Expect = 9e-18 Identities = 341/520 (66%), Gaps = 16/520 (3%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 |||||||| || ||||| || ||||| | || || || |||||||| || || | ||| Sbjct 952278 TCGTTAGAGAAGGTGAGGCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCG 952337 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||||| ||||| || || || || || ||||| || || || ||| | || || | Sbjct 952338 AAAGAGCCAGAGAAAAAGATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAAG 952397 Query 48303 -CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 ||| || | |||| ||||| || | |||||||||||||||||||| | || || Sbjct 952398 GCTGACTCC-TTGTCCGAGATCCAGCGAAGAGCCCAATCAGCCTTCTTCTTAATGCAGGG 952456 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAAGt-ttttttCATTGC--TATCTTTAACGTAAGT 48415 || || || || |||| ||||| || | | ||| || || | || || Sbjct 952457 GATAGTCTCGATGGCATCGAAGAG---GTGCTCGCGCTGTGCGGGGTCCTTGATATACGT 952513 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 || || | || ||| | || |||||||| || || || ||||| || ||||| Sbjct 952514 GTCGATGAGGAGCGAGTACGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTA 952573 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535 || || | ||| || | ||| ||||| | | || || || ||| ||||| || Sbjct 952574 GAAGCAGCGCGCCTCGGCCGCCTGGACCTCGTTGGAGAAACGCTCTACCAGGTTCTCGTT 952633 Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAAT---ATTTTTC 48592 || || || || || || || || || | || || || || | || || Sbjct 952634 GACGATACCGTCGGAGGCGGCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCATC 952693 Query 48593 GTTG-GAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 48651 |||| || | | || |||||||||| | ||| || || | || | ||| ||||| | Sbjct 952694 GTTGTTGAGGC-GGTTGTTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGG 952752 Query 48652 TCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 |||| || |||||||| || || || ||||| | ||| || Sbjct 952753 TCCAGAAGGATGCCTCGGCCTTCTTGTACATTTGCCAGAT 952792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668687116320