Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 122 1e-22 >seq6 Length=3889359 Score = 122 bits (134), Expect = 1e-22 Identities = 340/516 (66%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 |||||||| || ||||| |||||||| | || ||||| |||||||| || || | ||| Sbjct 952278 TCGTTAGAGAAGGTGAGGCCAGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGAGGCG 952337 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 ||||| ||||| || || || || || || || ||||| || ||||| | || || | Sbjct 952338 AAAGAGCCAGAGAAAAAGATACCCTCGACGGCAGCGAAGGCTACAAGGCGTTCAGCGAAG 952397 Query 46792 -CTGGCATCATTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847 ||| | || || | || ||||| | |||||||||||||||| ||||| | || || Sbjct 952398 GCTGAC-TCCTTGTCCGAGATCCAGCGAAGAGCCCAATCAGCCTTCTTCTTAATGCAGGG 952456 Query 46848 CATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATC 46907 || || || || |||| ||||| | | | || || | ||| || || Sbjct 952457 GATAGTCTCGATGGCATCGAAGAGGTGCTCGCGCTGTGCGGGGTCCTTGATATACGTGTC 952516 Query 46908 TATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 || | || ||| | || || |||||||| || || ||||| || ||||| || Sbjct 952517 GATGAGGAGCGAGTACGTCTCAGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAA 952576 Query 46968 ACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCAC 47027 || | || || | ||| ||||| | | || || || || ||||| || || Sbjct 952577 GCAGCGCGCCTCGGCCGCCTGGACCTCGTTGGAGAAACGCTCTACCAGGTTCTCGTTGAC 952636 Query 47028 TATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGT 47087 || || || || || || || |||| || || || || | ||||||| | Sbjct 952637 GATACCGTCGGAGGCGGCGAAGAACGCCAGAACGTGCGAGATGAAGTGGCGTTCATCGTT 952696 Query 47088 AGTCA---GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144 | | | || |||||||||| | ||| || || | || | ||| ||||| ||||| Sbjct 952697 GTTGAGGCGGTTGTTCCAGTCATGCAGATCCTTGGACAGGTCCATTTCCTCAGCGGTCCA 952756 Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||| || ||||| || || || ||||| | ||| || Sbjct 952757 GAAGGATGCCTCGGCCTTCTTGTACATTTGCCAGAT 952792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934284148160