Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq9 127 5e-24 >seq1 Length=4437623 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||||||||| || |||||||||||||||| | ||| | ||||| Sbjct 1911319 AGAACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGGAAAGAGTACGGCCATCC 1911260 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | |||||||||| || ||| || ||||| ||| Sbjct 1911259 TCAAGCTGCTTGCCCGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATACCCTCCTTGTCT 1911200 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| ||||| | || | | |||| ||| ||| || || || || || || Sbjct 1911199 TGGATCTTTGCCTTGACGTTATCGATGGTGTCCGAAGACTCAACCTCGAGGGTGATCGTC 1911140 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || |||| |||||| Sbjct 1911139 TTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1911108 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || ||||||||||| |||| | ||| | || || || | Sbjct 1911822 CAAG-TGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCGTCCTCAA 1911764 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | || |||||||| | || ||| |||||||| || || | Sbjct 1911763 GCTGTTTTCCCGCAAAGATCAACCGTTGCTGGTCGGGCGGGATGCCTTCCTTATCCTGGA 1911704 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | ||||||| ||| ||||| ||||| ||||| |||| Sbjct 1911703 TCTTCGCCTTGACGTTGTCGATCGTGTCTGAGGACTCGACTTCCAGAGTGATAGTCTTGC 1911644 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| | |||||||||||||| |||||| Sbjct 1911643 CCGTCAAAGTCTTCACGAAGATCTGCAT 1911616 >seq9 Length=3088601 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || ||||| ||||| || ||||||||||| || | | ||| | || || Sbjct 2856265 GAGGACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTACGACCGTC 2856324 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||| ||||| || | ||||||||| | | || |||||||| || Sbjct 2856325 TTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGAATACCTTCCTTGTC 2856384 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | |||| || || || || |||||||| || Sbjct 2856385 CTGAATCTTCGCCTTGACATTGTCGATCGTGTCCGATGATTCGACCTCCAGAGTAATCGT 2856444 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||||| |||||| Sbjct 2856445 CTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 2856477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820607816723