Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20hirsuta_20[genbank_20GCA_5F001302255.2_202017-02-03] 13 sequences; 37,433,966 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 174 4e-38 seq9 150 4e-31 >seq1 Length=4437623 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || ||||||||||||||||| || || ||| Sbjct 1911111 CAGATCTTTGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCTTCGGAC 1911170 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||| || ||||| || || ||||| |||||||||||| Sbjct 1911171 ACCATCGATAACGTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCGCCGGACCAGCAA 1911230 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| || ||||| | |||||| ||||||| ||| || Sbjct 1911231 CGCCTCATCTTCGCGGGCAAGCAGCTTGAGGATGGCCGTACTCTTTCCGATTACAACATC 1911290 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || || |||||| || | ||| Sbjct 1911291 CAGAAGGAGTCTACTCTTCACCTTGTTCTGCGTCTC 1911326 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||| | || || || || ||||| || || || || ||||||| Sbjct 1911619 CAGATCTTCGTGAAGACTTTGACGGGCAAGACTATCACTCTGGAAGTCGAGTCCTCAGAC 1911678 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| ||||| || ||||| ||||| || ||||||||| Sbjct 1911679 ACGATCGACAACGTCAAGGCGAAGATCCAGGATAAGGAAGGCATCCCGCCCGACCAGCAA 1911738 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||||||||| || || || | ||||| |||| || ||| || Sbjct 1911739 CGGTTGATCTTTGCGGGAAAACAGCTTGAGGACGGTCGCACTCTGTCCGACTACAACATC 1911798 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || ||||| || || |||| || Sbjct 1911799 CAGAAGGAGTCAACCCTTCA-CTTGGTT 1911825 Score = 100 bits (110), Expect = 7e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || ||||| ||||| | ||||| || || || Sbjct 1911847 CAGATCTTCGTTAAGACGCTCACCGGGAAAACAATCACATTGGAGGTCGAGTCTTCCGAT 1911906 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| |||||||| || || || || ||||||||||| Sbjct 1911907 ACGATCGACAATGTGAAGGCGAAGATACAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 1911966 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||| | || || || | || || | || || ||| || Sbjct 1911967 CGCCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGTACGCTGTCTGACTACAACATC 1912026 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || ||||| |||| Sbjct 1912027 CAGAAGGAGAGCACTCTGCACCTTG 1912051 >seq9 Length=3088601 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||| || || ||||| ||| || ||| Sbjct 2856474 CAGATCTTCGTCAAGACCCTCACGGGTAAGACGATTACTCTGGAGGTCGAATCATCGGAC 2856415 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| ||||| || ||||| |||||||| Sbjct 2856414 ACGATCGACAATGTCAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCCGACCAGCAG 2856355 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||||||||| || | ||||| | || || ||| || Sbjct 2856354 CGCCTGATCTTTGCCGGCAAGCAGCTCGAAGACGGTCGTACTCTCTCGGACTACAACATC 2856295 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| ||||| Sbjct 2856294 CAGAAGGAGTCGACTCTGCACCTTGT 2856269 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | || || || || ||||| |||||||| || || ||| Sbjct 2856755 CAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACGCTCGAGGTCGAGTCTTCCGAC 2856696 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| |||||||||||||| || || || || ||||| || || Sbjct 2856695 ACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCAACAG 2856636 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||| | || || || | || || |||| || ||| || Sbjct 2856635 CGTCTTATCTTTGCTGGCAAGCAGTTGGAGGACGGTCGCACCCTCTCCGACTACAACATC 2856576 Query 178104 CAAAAAGA 178111 || || || Sbjct 2856575 CAGAAGGA 2856568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730999503522