Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4755 93.3 9e-14 seq3662 93.3 9e-14 >seq4755 Length=85889 Score = 93.3 bits (102), Expect = 9e-14 Identities = 224/337 (66%), Gaps = 4/337 (1%) Strand=Plus/Minus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| ||||| ||| || |||||||| || || |||| | | || || | Sbjct 32101 TTCAAGACGCTCGAGCGTTCCTATCTCCTGAAGATCAATGGTCGCGTTGCCGAGCGTCCT 32042 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT--GACATAGAGAGCGTGC 248950 || ||| || | ||||| || |||||||| || ||| |||| ||||| ||| ||| | Sbjct 32041 CAACACTTGCTCATGCGTGTCGCTGTCGGCATCCAC--GGATCCGACATCGAGCGCGCGA 31984 Query 248951 TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCA 249010 ||||||| |||| | ||| || || | | || ||||| |||| || || |||| Sbjct 31983 TCGAGACCTACAACCTCATGTCCGAGCGTTACTTCACCCATGCGTCACCTACACTGTTCA 31924 Query 249011 ACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACT 249070 ||||||| || |||| ||||| ||||| ||||| || | | ||| | || |||| Sbjct 31923 ACGCCGGCACTCCCAACCCCCAGCTCAGCTCTTGCTTCCTCGTGTCGATGAAGGATGACT 31864 Query 249071 CTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCG 249130 | |||| || || || ||||| || | || | ||| ||| || |||| Sbjct 31863 CCATCGAGGGTATCTACTCGACGCTGAAGGACTGTGCCATGATCAGTAAGACGGCTGGCG 31804 Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGG 249167 | || ||| || | || ||||||||| || | ||| Sbjct 31803 GCATTGGTATCAACATCCACAACATCCGTGCTACGGG 31767 >seq3662 Length=107388 Score = 93.3 bits (102), Expect = 9e-14 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || |||| ||| ||| |||| ||| | |||||||| ||||| ||||| |||||||| Sbjct 78507 ACACCGGCCTTCGAGTAGTCGGACACGCGCTTCTCAAAGAAGTTCGTCTTGCCCTGGAGC 78448 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGC 157363 || ||||||||||| | ||||| ||||| | | |||||| ||| ||| || | | Sbjct 78447 GAGATCATGTCCATGAAGTCGAAGGGGTTCGTGACGTTGTAGTGCTTCTCG--CCGCCGA 78390 Query 157364 TGGTTCAGCCAGTAG----TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCT 157419 || | | || || ||||||||||||| |||||| | |||| ||| || | Sbjct 78389 GGG--CCACGAGGAGACGATCCGCCACAAACTCGATGTATTGGCGCATGAGCTTGGCGTT 78332 Query 157420 GATACCGATGAGCGCGACGGGAAGCGC 157446 ||||| |||||| | || || || || Sbjct 78331 CATACCAATGAGCCCAACAGGGAGAGC 78305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073693195640128