Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3662 154 2e-32 >seq3662 Length=107388 Score = 154 bits (170), Expect = 2e-32 Identities = 371/557 (67%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 ||||| || ||| ||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 75615 CATGCAAAGTCGGTGTGCATACCCTCGTCTCGTGAGATCAGTTCATTGGAAAAGGTGAGG 75674 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| | ||||||||| || ||||| ||||||| || || ||||| ||||||||| Sbjct 75675 CCGGGCATCAAGCCACGCTTCTTGAGCCAGAATATGGCGGCGAACGACCCGGAAAAGAAG 75734 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT-CCATAACTG-GCGCT-GTCATGT 50136 || || || || ||||| || || ||||| | |||| | | || | ||| | ||| Sbjct 75735 ATGCCCTCCACAGCGGCGAACGCTACAAGACGCTCTGCGAACACGGAGCGTTCGTCCGCG 75794 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| || |||||||| || | || |||| || || ||||| | Sbjct 75795 ATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTGTCGATGGCGTCG 75854 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| | ||| | ||||| | || || ||||| | || ||| | Sbjct 75855 AAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTACGTGTCGATGAGGAGGGAGTACGTC 75914 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 |||||||| | ||| || || ||||| || |||||||| || | ||||| | Sbjct 75915 TCCGAATGCACGTTCTCGATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGCGGCT 75974 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || || | || || ||| | | || || ||||| || ||||| ||| || Sbjct 75975 TGGACCTCGTTAGAGAACCGCTCAACGAGGTTCTCGTTCACGATGCCGTCTGAGGCGGCG 76034 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT---ATTCCAA 50433 || || || | || | || || || |||||||| ||| || | ||| Sbjct 76035 AAGAAGGCTAGCACGTAGGAGATGAAGTGCCGTTCGTTGGCATTTAACTTGCGGTCCCAG 76094 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 || ||| || | || | |||| ||||| || ||||| || || || | || ||| Sbjct 76095 TCCATGAGGTCGTGCGAGAGGTCTATCTCTTCTACCGTCCAGAAGGACGCTTGAGCATTT 76154 Query 50494 TTATACATATTCCAGAT 50510 || ||||| | ||| || Sbjct 76155 TTGTACATCTGCCATAT 76171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718221026146440