Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3662 136 5e-27 >seq3662 Length=107388 Score = 136 bits (150), Expect = 5e-27 Identities = 365/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 ||||| || ||| ||||| |||||| |||| || | ||| |||||||| ||||| Sbjct 75615 CATGCAAAGTCGGTGTGCATACCCTCGTCTCGTGAGATCAGTTCATTGGAAAAGGTGAGG 75674 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| | ||||||||| || ||||| ||||| | || || || || ||||||||| Sbjct 75675 CCGGGCATCAAGCCACGCTTCTTGAGCCAGAATATGGCGGCGAACGACCCGGAAAAGAAG 75734 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGT 42241 || || || || || || || || | ||| | |||| | | ||| | ||| Sbjct 75735 ATGCCCTCCACAGCGGCGAACGCTACAAGACGCTCTGCGAACACGGAGCGTTCGTCCGCG 75794 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | ||||| || |||||||| || | || |||| || || ||||| | Sbjct 75795 ATCCAGCGGAGGGCCCAGTCCGCCTTCTTCTTGATGCACGGCACGGTGTCGATGGCGTCG 75854 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 ||||| | ||| | ||||| | || || ||||| | || ||| | Sbjct 75855 AAGAGGAACGCGCGCTCAGTGGGGTCTTTGATGTACGTGTCGATGAGGAGGGAGTACGTC 75914 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || ||||| | ||| || || ||||| || |||||||| || | |||||| | | Sbjct 75915 TCCGAATGCACGTTCTCGATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCTGCGGCT 75974 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 || || || || | || || ||| | | || |||||||| || ||||| ||| || Sbjct 75975 TGGACCTCGTTAGAGAACCGCTCAACGAGGTTCTCGTTCACGATGCCGTCTGAGGCGGCG 76034 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT---ATTCCAA 42538 || || || | || | || || | ||||| | |||| || | ||| Sbjct 76035 AAGAAGGCTAGCACGTAGGAGATGAAGTGCCGTTCGTTGGCATTTAACTTGCGGTCCCAG 76094 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 || ||| || | || | |||| |||||||||||||| || || |||| || ||| Sbjct 76095 TCCATGAGGTCGTGCGAGAGGTCTATCTCTTCTACCGTCCAGAAGGACGCTTGAGCATTT 76154 Query 42599 TTATACATATTCCAGAT 42615 || ||||| | ||| || Sbjct 76155 TTGTACATCTGCCATAT 76171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671094560853960