Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3662 226 4e-54 seq4755 104 3e-17 >seq3662 Length=107388 Score = 226 bits (250), Expect = 4e-54 Identities = 404/581 (70%), Gaps = 14/581 (2%) Strand=Plus/Plus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 ||||| | |||||| | |||||||| |||||| |||| ||||| ||||||| || ||| Sbjct 77592 ATCATCAGATTTGGCAGATGTACAAGAAGGCTGAGGCGTCCTTCTGGACGGCTGAGGAGA 77651 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 | || |||||||||||||| |||| ||| | | || ||| || || || | | Sbjct 77652 TGGACCTGTCCAAGGACCTCCACGACTGGAACAACCGCCTGAACGACGACGAACGTCACT 77711 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-G 125189 | || |||||| || | || |||||||| | |||||||| ||||||||||| || || | Sbjct 77712 TCATCTCGCACGTTCTCGCGTTCTTTGCTGCGTCCGATGGTATCGTCAACGAGAACCTCG 77771 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTC--CAGAGGTGTCG-TGCTTTTACGGATTC 125246 | || || ||||| | ||| | ||| | | |||| ||| ||||| ||||| ||| Sbjct 77772 TCGA-GCGGTTCTCGAATGAG--GTCCAGGCGGCCGAGG-CTCGTTGCTTCTACGGCTTC 77827 Query 125247 CAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 || |||||||| |||||| | ||||| || | || || || || |||| ||||| Sbjct 77828 CAGATCATGATGGAGAACATCCACTCCGAGACTTATTCCCTTCTCATCGACACATACATC 77887 Query 125307 CGCGATCC---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATA 125363 ||||| || || | ||| ||||| |||| ||||| || | || | ||| Sbjct 77888 AAGGATCCTCGCCAGCGCGAGCAC---CTCTTCGACGCCATCGATACCATTCCCTGTATC 77944 Query 125364 CGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGAC 125423 || ||||| | |||| ||| |||||| ||| | ||||| ||| || || Sbjct 77945 AAGAAGAAGGCGGACTGGGCTCTTCACTGGATCTCCGACAAGGAGTCTGCGTTTGCTGAG 78004 Query 125424 AGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATC 125483 | || || || ||||| ||||| ||||| |||||||| || || || || | ||| Sbjct 78005 CGTCTCGTTGCCTTCGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCCTTCGCCTCTATC 78064 Query 125484 TTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCT 125543 || ||| | |||||||| || | |||||||| ||||| | |||||| | |||||| Sbjct 78065 TTCTGGTTGAAGAAGCGTGGCTTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATATCT 78124 Query 125544 CGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 || || |||||| | ||| ||||| ||| || ||||| Sbjct 78125 CGTGATGAGGGCATGCACACCGACTTCGCCTGCCTCCTGTT 78165 Score = 210 bits (232), Expect = 3e-49 Identities = 388/559 (69%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | ||||||||||| ||||| || ||||| |||||||| |||||| | || || Sbjct 76171 ATATGGCAGATGTACAAAAATGCTCAAGCGTCCTTCTGGACGGTAGAAGAGATAGACCTC 76112 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || | ||||| || ||||| || | || | || || | || || || Sbjct 76111 TCGCACGACCTCATGGACTGGGACCGCAAGTTAAATGCCAACGAACGGCACTTCATCTCC 76052 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 || | | |||||||| |||| ||| || || ||||| ||||| || || ||||| || Sbjct 76051 TACGTGCTAGCCTTCTTCGCCGCCTCAGACGGCATCGTGAACGAGAACCTCGTTGAG-CG 75993 Query 125198 ATTCTCTCAAGAGTTGACCATTCC--AGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 |||||| | ||| | ||| || ||||| ||||| ||||| ||||| |||||| Sbjct 75992 GTTCTCTAACGAGGT--CCAAGCCGCAGAGGCCCGCTGCTTCTACGGCTTCCAGATCATG 75935 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || ||||||||||| ||||| | |||||| || || |||| |||||| || || Sbjct 75934 ATCGAGAACGTGCATTCGGAGACGTACTCCCTCCTCATCGACACGTACATCAAAGACCC- 75876 Query 125316 CAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || | | | | | |||| |||| |||||||| ||||||| || || ||||| Sbjct 75875 CACTGAGCGCGCGTTCCTCTTCGACGCCATCGACACCGTGCCGTGCATCAAGAAGAAGGC 75816 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || ||||||| ||||| || || ||| || | || || || Sbjct 75815 GGACTGGGCCCTCCGCTGGATCGCGGACGAACGCTCCGTGTTCGCAGAGCGTCTTGTAGC 75756 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCTTTTGGCTCA 125493 |||||||| || ||||||||||||||||| |||| ||| || ||||| || ||||||| Sbjct 75755 GTTCGCCGCTGTGGAGGGCATCTTCTTTTCCGGGTCGTTC-GCCGCCATATTCTGGCTCA 75697 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||||| || | |||||||| || || || || | || || |||||||||| Sbjct 75696 AGAAGCGTGGCTTGATGCCCGGCCTCACCTTTTCCAATGAACTGATCTCACGAGACGAGG 75637 Query 125554 GCCTACACTGTGACTTTGC 125572 | | ||| |||||||| Sbjct 75636 GTATGCACACCGACTTTGC 75618 Score = 89.7 bits (98), Expect = 8e-13 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 ||||| |||||| |||||| ||| || | ||||| ||||||||||| |||||||| || Sbjct 78323 ATTGGTATGAACGCCAAGCTCATGCGCCAATACATCGAGTTTGTGGCGGATCGTCTCCT- 78381 Query 125760 TACGAGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACC 125816 || | | ||| || ||| ||||||| || ||| ||||| || |||||| | Sbjct 78382 --CGTGGCCCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGACTTCATGGAC 78439 Query 125817 AGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || || || |||| ||||| ||||| || |||||| Sbjct 78440 ATGATCTCGCTCCAGGGCAAGACGAACTTCTTTGAGAAG 78478 >seq4755 Length=85889 Score = 104 bits (114), Expect = 3e-17 Identities = 196/281 (70%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 97949 TCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACAT 98008 ||| ||||||||||||||| | ||||||| |||||| || || | || ||||| Sbjct 30391 TCTCTGGAACGATGACATGAAGAACATGATCATTGCCAACAACGGCTCGGTCCAGAACAT 30332 Query 98009 TACCATCATCCCGGAAGAGTTGCGCAGA--ATCTACAAGACTGTCTGGGAGAT-TCCGAC 98065 ||||||||| || || || || ||||||||||| ||||||||||| ||| | Sbjct 30331 CGACATCATCCCCGACGA--TGTCAAGGCCATCTACAAGACCGTCTGGGAGATCTCCCAG 30274 Query 98066 CAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTT 98125 |||| | | |||| | || |||||| | |||| | ||| |||| |||||| | Sbjct 30273 -AAGAAGGTCCTCGACCTCGCCGCCGACCGTGGTGCTTTCATCTGCCAGTCTCAATCCCT 30215 Query 98126 CAATCTGTACGTTGCCGAGCCCACCTACAGTCGTA-TGACTTCGATACACTTTTACGCAT 98184 ||| | || | || | ||| | || | | | |||| || ||||| |||| | Sbjct 30214 CAACGTCCACCT-GCAGGCCCCTACCACGGGCCAACTGACGAGCATGCACTTCTACGGTT 30156 Query 98185 GGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACA 98225 |||| ||||| |||||||| ||||||||||| ||| | ||| Sbjct 30155 GGAAGAAGGGTCTCAAGACCGGCATGTACTACCTGCGCACA 30115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741009910299960