Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq633 102 7e-17 seq4520 89.7 4e-13 >seq633 Length=42484 Score = 102 bits (112), Expect = 7e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||| | | ||| ||||||| |||||||| ||| || | Sbjct 35177 CTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGCCCGTCCTCAAGCTGCTTCCCGGCGAA 35236 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||| || || | | |||||||||| || || ||||| | Sbjct 35237 GATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 35296 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || |||||||| | ||||| ||||| || ||||| || |||||||| || ||| Sbjct 35297 GTCG--ATGGTATCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGTGAGGGTCTTC 35354 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 35355 ACGAAGATCTGCAT 35368 >seq4520 Length=427429 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| |||||||||||||| | ||| || ||||||| |||||| Sbjct 157911 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGCTGC 157852 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || || |||||||| ||| || | | ||||||||| ||| || Sbjct 157851 TTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGAATCTTT 157792 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || |||||||||| ||||| ||| | || || || || |||| Sbjct 157791 GCCTTGACGTTGTCG--ATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCGG 157734 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || ||||| || || ||||| Sbjct 157733 TCAACGTCTTCACGAAGATTTGCAT 157709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421223881991321