Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4779 87.8 9e-13 seq3145 86.0 3e-12 seq2958 86.0 3e-12 seq4408 84.2 1e-11 seq3750 84.2 1e-11 seq3224 84.2 1e-11 seq419 82.4 4e-11 seq104 82.4 4e-11 >seq4779 Length=188898 Score = 87.8 bits (96), Expect = 9e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 30473 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 30414 Query 11528 CCGTCGA 11534 |||| || Sbjct 30413 CCGTTGA 30407 >seq3145 Length=39321 Score = 86.0 bits (94), Expect = 3e-12 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 6622 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 6563 Query 11528 CCGTCG 11533 || ||| Sbjct 6562 CCATCG 6557 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 14107 ATTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCA 14166 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||| | |||| Sbjct 14167 ACTGAGCTAGTCGGCC 14182 >seq2958 Length=18994 Score = 86.0 bits (94), Expect = 3e-12 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 16783 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 16724 Query 11528 CCGT 11531 |||| Sbjct 16723 CCGT 16720 >seq4408 Length=13706 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 4011 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 3952 Query 11528 CCG 11530 ||| Sbjct 3951 CCG 3949 >seq3750 Length=82697 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||| | | |||||||||| ||||||| ||||||||||||| |||| Sbjct 32265 AAAAGCAA--TGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGC 32208 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| | |||| Sbjct 32207 TCTAACCAACTGAGCTAGTCGGCC 32184 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||| | | |||||||||| ||||||| ||||||||||||| ||| Sbjct 36609 AAAAAAAAACATGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACG 36668 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||| | |||| Sbjct 36669 CTCTAACCAACTGAGCTAGTCGGCC 36693 >seq3224 Length=222471 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 126028 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 126087 Query 11528 CCGTC 11532 || || Sbjct 126088 CCTTC 126092 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| | | |||||||||| ||||||| ||||||||||||| ||||||| || Sbjct 131794 AAACTGGCCAACGCCGGGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAAC 131735 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||| | |||| Sbjct 131734 CAACTGAGCTAGTCGGCC 131717 >seq419 Length=103444 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 39153 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 39094 Query 11528 CC 11529 || Sbjct 39093 CC 39092 >seq104 Length=54692 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | || Sbjct 29421 GGATCGAACCGACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTCGG 29480 Query 11528 CC 11529 || Sbjct 29481 CC 29482 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261474242377396