Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20polyzona_20[genbank_20GCA_5F001939255.1_202017-01-09] 5,321 sequences; 36,629,716 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq633 104 2e-17 seq4520 98.7 9e-16 >seq633 Length=42484 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||||| ||||| ||||| || | ||| ||||| | ||| ||||| ||||| Sbjct 35165 GTGCAGGGTAGACTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGCCCGTCCTCAAGCTG 35224 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | ||||| | | ||||| || ||||| || ||||| ||||| | || || Sbjct 35225 CTTCCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTT 35284 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||||||| | ||| || || | | ||||| || | ||||||||| || || || Sbjct 35285 GGCCTTGACGTTGTCGATGGTATCCGAGGACTCGACCTCGAGCGTGATGGTCTTGCCGGT 35344 Query 94984 AAGAGTTTTCACAAAGATCTGCATGCT 95010 || || ||||| |||||||||||||| Sbjct 35345 GAGGGTCTTCACGAAGATCTGCATGCT 35371 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| |||||| | ||| | |||||||| ||| || || ||||| Sbjct 34898 TCCTTCTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCCAACTGCTTGCCCGCAAAG 34957 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | ||||| || ||||||||||| || ||||| | || || ||||||||| | Sbjct 34958 ATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTG 35017 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| |||||| | ||||| || | |||||||| || || || | || || ||| Sbjct 35018 TCGATAGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTCTTGACA 35077 Query 94997 AAGATCTGCAT 95007 ||||||||||| Sbjct 35078 AAGATCTGCAT 35088 >seq4520 Length=427429 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| ||||| || | ||| |||||| || || | ||||| ||||| || ||| Sbjct 157905 GTAGACTCCTTCTGAATGTTGTAATCGGACAACGTCCGGCCGTCCTCAAGCTGCTTGCCG 157846 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | ||||| || || ||||| || || ||||| | ||| ||||||||| Sbjct 157845 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGAATCTTTGCCTTG 157786 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| || || | ||||| |||| ||||| || || || || | || Sbjct 157785 ACGTTGTCGATGGTATCGGACGACTCGACCTCAAGGGTGATCGTCTTGCCGGTCAACGTC 157726 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| Sbjct 157725 TTCACGAAGATTTGCAT 157709 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| || |||||||| | ||| || ||| | || | |||||| | Sbjct 157688 CAAGATGAAGAGTCGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGA 157629 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| ||||||| | | |||||| || ||||| || || || ||||| | | Sbjct 157628 GCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGA 157569 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||| || | ||| ||||| | ||||| || | |||||| || || | Sbjct 157568 TCTTCGCCTTCACATTGTCGATGGTGTCTGAAGACTCGACCTCGAGCGTGATCGTCTTGC 157509 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || || |||||||||||||| Sbjct 157508 CCGTGAGGGTCTTGACAAAGATCTGCAT 157481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || |||||||| | ||| ||||| | |||| |||||||| ||| Sbjct 158194 GTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGAAAGAGTGCGACCATCCTCCAACTG 158135 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | ||||| | | || || || || || ||||| || ||||| | || || Sbjct 158134 CTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGCGGGATACCCTCCTTGTCTTGGATCTT 158075 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 |||||||||| | ||| ||||| | || || || | |||||||| || ||||| Sbjct 158074 TGCCTTGACGTTGTCGATCGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 158015 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || |||||||||| Sbjct 158014 CAACGTCTTGACGAAAATCTGCATGC 157989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448261383031560